Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00692 ATGGATGGCGTCTTTGCCCTCCCTCAAGCCGCCAGAGCTGATTTTCTCCGCTCTCTGGTTCAATCTTTTGGCTGCACTTACGTTTCTCTCTGGCAATATGACTCCAATTTATCAAATCGTTTGTTCTTCTTGGATGGGTTTTACGACGTAACGAACAACCAACCAAGCTCTTCTTTAGGAAACAGTGAAGCTGAAAGGCTTTTTCACCAATATCGGGCTTTAACGTTTGATGTCAATCATGACTGTGTTCCTGGAATCGCTTTCAGGAACCACCTTCCCTACATGGAGCTGCAACAAATGGATCTTCTAATACTGGCATCGACAGAAATACAGACACAATTCTTTCAGATTGCGGTTTTCATGGGGTGCAAAAAAGGAGAAATTGAGCTTGGGTTCTCGAACATGTCTCAAGTTGACATTCAGACAGCACTTAAAAATTTATTTCCTGAAGATTTCTATATACATTCACAATCAACAACTGATCATCAGAATCCACCTTCATCATCATCTTCATTCGTATCAATATCTACGGGTAGCCCTGATCAATGTTCATCCCTATTACTCAGTATTCCGGGCACTTCCCAGTCCCACTTTCCTGAAACCCTTGGTGTGGTAATTCCCACACAAACACAAACTAGTCCACACCAACAAAGCATCCAACCATTAGCTCAAATCATTCCAAGTTATTTCCCCACACCAGAGGGTGAACATGAAGCAATAGTAGCAGCATTTCTCCACGTTATATCTACACCTTCTTCTTCAACTCCTCAGCAGCATCAACCCCACCAAAATTTTCCTAATCATGCTTCAATAACACATCAAGAAGATACAGCTATCAAGAGATATAGATCAGATATAAACCCAAATATAACACCCCATATGTTGGGGTCCAATTTTCGCAGGCAAAGCATGCAGAATAGATCATTTGCATTCTTTAGAAACTTAAATTTGATGAGAATGAGAGACAGCAATCAATTAACCCGTCCCATTAGTACCCAGCTTTATCATACGATATCAGAGAGAAGAAGGCGTGAAAGACTCAATGAGAATTTTCAGGCACTTAGAGCACTTCTTCCTCCGGGAACTAAGAAAAACAAAGCGTCGATTCTTACAACAGCAAAGGAGACAATGAGATCTATGATGGATGAAATTGAAAAGCTTAACATGAGAAATCAGCAGTTGATGACAATTTTGTCAGCCAAAGAAGCTACAGCTACTAGTACTACTGAAGAAAACAAAGGTAGGTCCACAAATGAAAGATTGAATGTTGGGGTTTCGCATGTATCAGAATCAAGTTCATCAGAAGAGCAAATGGTACTGGACTTGCAAGTGACGGTGAGAGGAGAAAGTTCTCAAGTTGATGTATTGATTCGCTTATTGGAATTCTTAGAAGGGGTTCAGAACGTAAACTTAATGTCGATGGGCGCAAACAACCAGATTACAGGAGGGACAGCCATTAATCGATTAACCTTCAGGCTGAGGATTATTGAGGGCAGTGAATGGGACGAGCGTGCTTTCCAGGAAGCAGTTAGAAGAGTGGTTGCTGACGTAATACAATAA 1560 0.4115 MDGVFALPQAARADFLRSLVQSFGCTYVSLWQYDSNLSNRLFFLDGFYDVTNNQPSSSLGNSEAERLFHQYRALTFDVNHDCVPGIAFRNHLPYMELQQMDLLILASTEIQTQFFQIAVFMGCKKGEIELGFSNMSQVDIQTALKNLFPEDFYIHSQSTTDHQNPPSSSSSFVSISTGSPDQCSSLLLSIPGTSQSHFPETLGVVIPTQTQTSPHQQSIQPLAQIIPSYFPTPEGEHEAIVAAFLHVISTPSSSTPQQHQPHQNFPNHASITHQEDTAIKRYRSDINPNITPHMLGSNFRRQSMQNRSFAFFRNLNLMRMRDSNQLTRPISTQLYHTISERRRRERLNENFQALRALLPPGTKKNKASILTTAKETMRSMMDEIEKLNMRNQQLMTILSAKEATATSTTEENKGRSTNERLNVGVSHVSESSSSEEQMVLDLQVTVRGESSQVDVLIRLLEFLEGVQNVNLMSMGANNQITGGTAINRLTFRLRIIEGSEWDERAFQEAVRRVVADVIQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00692 519 Coils Coil 370 397 - -
Pumo4g00692 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Pumo4g00692 519 CDD bHLH_AtbHLH_like 336 387 IPR045239 -
Pumo4g00692 519 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 106 516 IPR044658 -
Pumo4g00692 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 396 IPR036638 GO:0046983
Pumo4g00692 519 Gene3D - 332 405 IPR036638 GO:0046983
Pumo4g00692 519 Pfam Helix-loop-helix DNA-binding domain 336 380 IPR011598 GO:0046983
Pumo4g00692 519 MobiDBLite consensus disorder prediction 157 176 - -
Pumo4g00692 519 SMART finulus 337 386 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00692 Pumo-Chr4 8971441 8975204 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00692 1 517 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.949 3.53e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g00692 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00692 - - gmx:102670282 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00692 4 8971441 8975204 Pumo4g00692 4 8971441 8975204 ECH
Pumo4g00692 4 8971441 8975204 Pumo2g01641 2 30964036 30966955 PCT