Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00691 ATGGATGGCGTCTTTGCCCTACCTGAAGCCGCCAGAGCTGATTTTCTCCGCTCTCTGCTGCGATCTTGTGGCTGCACTTACGTTTGTCTCTGGCAATATGACTCCAATTTATCCAATTTGCTCTTCTTAGATGGTGTCTATGATGTAACGAACAACCAACCAAGCTCTTCTTTAGGGAGTGTAGCTGAAAGGCTTTTTCACCAATATCGGGCTTTAACGTTTGATGTCAATCATGAGTACCGTGTTCCTGGAGTCGCTTTCAGGAATAATCATCTTCCCTACATAGAGCTGCACCAATTGGATCTTCTAAGACTGACATCGGCAGAAATACAAACACAATTCTATCAAATTGCTGTTTTCATGGGGAGCAAAAGCGGAGAAATTGAGCTTGGCTTCTCCAACATTAGTCAAGTTGACATTCAGACAGCCCTTAAGAATTTATTATTTCCACAAGATTTCTATACACATTCACAATCAACAACTGATCATCAGAATCCACCTTCATCATCATCTTCATTCGTATCAATATCCACGGGTAGCCCTGATCAATGTTCATCCCTATTACTCAGTATTGCGGGCACTTCCCAGTCCCACTTTCCTGAAACCCTTGGTGTGGTTCCCACACAATCACAAACACAAACTAGTCCACACCAACAAAGCATCCAACCATTAGCTCAAATCATTCCAAGTTATTTGCCCACACCAGAGGGTGAACTTGAAGCAATAGTAGCATCATTTATCCGTGTCATGTCTTCTCCTTCTTCTTCAGCTTCTGATCAGCAGCATCAACCCCACCAAATTTTGCCTAATTATACTTCAGTAGTACATCCAGGAGATACAGCTTTCAAGAGATATAGATCAGATATAATGAACCCAAATATAACAACACCCCATAAGGGGTCCAATTTTCGCAGGCAAAGCATGCAGAATAGATCATTTGCATTCTTTAGAGACTTAAATTTAATGAGAGAACGCAATATTATTCAAGCACCCCGTCCCATTACCCAGCAGCATCATATGATAACAGAGCGAAGAAGGCGTGAAAAACTCAACGAGAGTTTTGAGGCACTTAGAGCACTTCTTCCTCCGTGA 1092 0.4212 MDGVFALPEAARADFLRSLLRSCGCTYVCLWQYDSNLSNLLFLDGVYDVTNNQPSSSLGSVAERLFHQYRALTFDVNHEYRVPGVAFRNNHLPYIELHQLDLLRLTSAEIQTQFYQIAVFMGSKSGEIELGFSNISQVDIQTALKNLLFPQDFYTHSQSTTDHQNPPSSSSSFVSISTGSPDQCSSLLLSIAGTSQSHFPETLGVVPTQSQTQTSPHQQSIQPLAQIIPSYLPTPEGELEAIVASFIRVMSSPSSSASDQQHQPHQILPNYTSVVHPGDTAFKRYRSDIMNPNITTPHKGSNFRRQSMQNRSFAFFRDLNLMRERNIIQAPRPITQQHHMITERRRREKLNESFEALRALLPP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00691 363 Pfam Helix-loop-helix DNA-binding domain 337 362 IPR011598 GO:0046983
Pumo4g00691 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 362 IPR036638 GO:0046983
Pumo4g00691 363 MobiDBLite consensus disorder prediction 157 177 - -
Pumo4g00691 363 Gene3D - 334 363 IPR036638 GO:0046983
Pumo4g00691 363 CDD bHLH_AtbHLH_like 339 363 IPR045239 -
Pumo4g00691 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 363 IPR011598 GO:0046983
Pumo4g00691 363 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 107 363 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00691 Pumo-Chr4 8955914 8957645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00691 1 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 33.902 1.10e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g00691 HLH 5.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00691 - - gmx:102670282 470.314