Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00686 ATGGAAAACAGAGGAAACTTGTGTGAAAGTAAAACACATTCTCACACTCACTCGCACAGGAAGCGGCAAAGAAAGCAGAGAGACATGGGAGAAGAAGAAGTAGCAAGAGTGAAAGCAGAGTTGTTCGACGACGACAGCGAAAGCGATCGCCACGACGACGTTTTGAGCGAGAGCAAGGACTCGGGAGTGACGACGGTTCACGTGAAAGAAGAAGAGATGGATGACGGCGCCGTTAACGGGTCATCGTCGTCGATGGAGCAGTTGCCGAAACCGAGGGAAGGGTTGCACGAGGTGGGTCCCCCACCGTTCCTGAAGAAGACCTTCGAAATGGTGGAGGACCCTCACACCGACCTCATTGTGTCGTGGAGCCAAGCTCGGGACAGTTTCATCGTTTGGGACTCTCACGAATTCTCCAAAACCCTTCTCCCCAAGTACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGTCAGCTCAACACCTATGGCTTTAGGAAGGTTGATTCGGACCGATGGGAGTTTGCAAACGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGGAGTAAGTACAACAAACTGCATCAGGGAGCTTTCAATATGATGAAGCCAGGCGTGGATTCTGAAGTGGAGGAACTGAAGAAGGACCAGAACATTCTGAAGGTGGAAATTCTGAAGCTGAGGCAGCAGCAGGAGAATTCGCATGTTCAGCTCACAAATGTTCAGGAGAGAGTTCGGTGTGCAGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACCAGAATGGCTAGAAGGCCTGCGTTTGTTGAGCAGTTAATCCAAAATATCAGGCGAAAAAGAGAGATTGATGGTAATGACATGGTTAAGAGGCCTAGATTGATGGGACCACCATGCCATGTACCCTTCCCTAAGACCATGGAGACAACACCTAATTTTGATTATAGGCACCAAGGTCATAAACAATTTGCTACATTGCAGTCTGAGCTCAATGGACTTCTGTCTGAAACTGTGAGCACTAGCAGGATGGACCACCCAACTCCCTCTCCTTTGGAAGATGAATTATGCAACTCTGTGCAAGGATTACGGGCTCATGGTTGTTCTAGAGTAAGTGCGCATGATGCATCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGAGAGAAAATTCTATAGTTGATGAAGAACTAGATGTGAATGACTCAAATATCTATCTTGAATTAGAGGATTTGATTACTAAGCCAACAGATTGGTCTGTTGGATCTGCAAGTGGATTGGTGGAACAAACCAGTTGA 1305 0.4667 MENRGNLCESKTHSHTHSHRKRQRKQRDMGEEEVARVKAELFDDDSESDRHDDVLSESKDSGVTTVHVKEEEMDDGAVNGSSSSMEQLPKPREGLHEVGPPPFLKKTFEMVEDPHTDLIVSWSQARDSFIVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGAFNMMKPGVDSEVEELKKDQNILKVEILKLRQQQENSHVQLTNVQERVRCAEMKQYQMMFFLTRMARRPAFVEQLIQNIRRKREIDGNDMVKRPRLMGPPCHVPFPKTMETTPNFDYRHQGHKQFATLQSELNGLLSETVSTSRMDHPTPSPLEDELCNSVQGLRAHGCSRVSAHDASSAYHVMSEKLMRENSIVDEELDVNDSNIYLELEDLITKPTDWSVGSASGLVEQTS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00686 434 Gene3D - 96 193 IPR036388 -
Pumo4g00686 434 PRINTS Heat shock factor (HSF) domain signature 141 153 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g00686 434 PRINTS Heat shock factor (HSF) domain signature 103 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g00686 434 PRINTS Heat shock factor (HSF) domain signature 154 166 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g00686 434 SUPERFAMILY "Winged helix" DNA-binding domain 99 192 IPR036390 -
Pumo4g00686 434 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 89 303 IPR027725 -
Pumo4g00686 434 ProSitePatterns HSF-type DNA-binding domain signature. 142 166 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g00686 434 MobiDBLite consensus disorder prediction 25 76 - -
Pumo4g00686 434 Coils Coil 214 234 - -
Pumo4g00686 434 Pfam HSF-type DNA-binding 103 192 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g00686 434 Coils Coil 20 40 - -
Pumo4g00686 434 MobiDBLite consensus disorder prediction 1 99 - -
Pumo4g00686 434 SMART hsfneu3 99 192 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo4g00686 434 FunFam Heat shock transcription factor 1 96 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00686 Pumo-Chr4 8924402 8927053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00686 89 432 HSF AT2G26150 41.311 2.54e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo4g00686 HSF_DNA-bind 2.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00686 K09419 - gmx:100818430 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00686 4 8924402 8927053 Pumo4g00686 4 8924402 8927053 ECH