Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00684 ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGCACTAATATTCAAACGAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGTTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTCAGATGGTTTGGAGTGGAGGGAGATTACAATGTTTTAGTGATGGATCTGCTTGGACCCAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTATCGCTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCAAAATCATTTCTGCATCGGGATATCAAACCGGATAATTTTCTAATGGGATTAGGAAGGCGTGCGAACCAGGTTTATGCCATTGATTTTGGTTTGGCCAAGAAATACAGAGATAGTTCAACACATCAACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTTGAGTCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGTCTTAAAGCGGGAACAAAGAAACAGAAGTACGAGAAAATCAGTGAAAAAAAGGTTTCTACCTCGATTGAAGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCTTACTTCCATTACTGCCGATCGTTGAGGTTTGATGATAAGCCAGATTATGCTTACCTCAAAAGGATATTTCGTGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGACTGGACCATTTTGAAGTATCAGCAATCACAGCTAGCCACTCCTCCAACACGGGCCATTGTAAGTCTTTTTCTTATGCCCCCTTTTGGGATTATTTTGATGTCTGCAACTGATGAAATTTCCTGA 990 0.4101 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIVSLFLMPPFGIILMSATDEIS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00684 329 CDD STKc_CK1_delta_epsilon 8 282 - -
Pumo4g00684 329 FunFam Putative Casein kinase I 1 85 - -
Pumo4g00684 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Pumo4g00684 329 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00684 329 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Pumo4g00684 329 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00684 329 FunFam Casein kinase I isoform delta-like 1 308 - -
Pumo4g00684 329 PANTHER CASEIN KINASE-RELATED 9 293 - -
Pumo4g00684 329 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Pumo4g00684 329 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Pumo4g00684 329 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00684 Pumo-Chr4 8879321 8885213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00684 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.33e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pumo4g00684 Pkinase 4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00684 K02218 - gmx:100785851 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00684 4 8879321 8885213 Pumo4g00684 4 8879321 8885213 ECH
Pumo4g00684 4 8879321 8885213 Pumo2g01652 2 31118561 31128578 PCT