Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00681 ATGTGCGGTGACGCCACGAACTGGGACGAAGACGCATACAGGGAAACCGTACTCAAGGAGAGAGAAATCCAAACCCGAACCGTTTTCCGAACCGCTTGGGCCCCACCCTACAGCTCTAACCTCGACACTCTCCTCGTTGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATTTCTTCCTCCATCGCCGCCTCCAAGCTCAAAAATCCATTCGGTTTTGTCAATGCCGATCCAGATGAGTTATTGGCTGAGCCAAATTGCTACGTTCAAGCGCACGATGGACCTGCGTATGATGTCAAATTTTACGGTGATGGCGAGGATGCTCTGTTGCTGAGCTGTGGTGATGATGGTCGGATTCGAGGATGGAGATGGAAGGAATTTTCAATCTCAAATTATTCTGTTTCTTCCCAAGGAAATGATATCAAGCCTGTACTTGATGTGGTGAATCCTCAACACAAAGGTCCTTGGGGTGCGCTTTCACCTATCCCTGAGAATAATGCTATTGCTGTTAATACTCAGGGGGGATCTGTTTTCGCCGCATCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTCAAGGGGCACATGGACTATTTGCATTGTATAGTTGCTCGCAACTCATCAAATCAGATCATAACAGGTTCGGAGGATGGGACCACACGAATTTGGGATTGCAAAAGTGGAAAGTGTACCCAAGTGATTGATTCAGCAAAAGATTTGAAATTAAAGGGATCTGCTTCATGGGTTGGCTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTTCAGAATGCGTATCAAAGATTCCAACTCGTGCTTGTGTACAGGACATGTTATTTGACAATAATCAAATTTTGACAGTTGGTACAGATCCTCTACTCAATCGCTTTGACATGAACGGCAATATCCTTTCACAAATACAGTGTGCTCCTTCGTCATCTTTTTCTATCTCCCTACATCCGGCAGGGGTTATGGCAGTCGGAGGTTATGGATGTCTTGTTGATGTTATCTCACAATTTGGCAGCCACATGTGCACATTTCATTGCCAATCTGGATCCAGTAACGAAAGCCTAGATCTGGATCTGGATTCCTCCTCGCCGCCACCTCCACCCCACCACCGACGTGTGTTGCCAAATTGGGTTGTCGTCGACCTCTCTGAAGAGAGCACCTATGCGGTGATCTTGCTCCACGTCCTCTTCTATGTGAAGGTTTATGAGGTTCCCGAGGGAGTCCGGGATGGGGCCCATGAGGTTGTAGCCGCTGAGCTAGAGCGTTTCCAAGTTGGTGAGGTTGTCGAGGGAGTGAGGAATGGGGGAAGGGAGAAAAGGGTTAAAGGAGAGGTTAAGCGTTTTGAGGGTGCACTTGACGCTCACACTCATTTCCCTCTCTGCGTTCGGCACCAGCGAAACGCTCTTTTCTTAATCTTTTCTCGACTCCGCGGCGTAGATCCGAGGAGTTCGGGAAACCCTAACTCAACTCCCTTCACAACACACCGTTTCTTTTCCCTAACCCACTCTCCATCATCTCAAGTCATGGCTGGAATTGCACCTGAGGGGTCACAGTTCGATGCTCGTCAATATGATACCAAAATGAATGACTTACTTTCATCTGACGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGACAGTTTTGATGCTATGGGTTTGCAGGAGAATCTTCTCAGGGGTATTTACGCATATGGTTTTGAGAAGCCATCAGCCATTCAGCAAAGGGGAATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACTGGGAAGACAGCTACTTTCTGCTCTGGTATTCTGCAGCAACTTGACTATAGCTTGACACAATGCCAGGCCTTGGTTTTAGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAAGTTATGCGGGCACTTGGAGATTATCTAGGTGTGAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTGCGTGAAGACCAACGCATCCTATCTAGCGGTGTTCATGTTGTGGTTGGTACCCCTGGTCGTGTGTTTGATATGCTGCGCAGACAGTCACTTCAGCCAGATCACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTTAAGGATCAGATCTACGATATATTTCAGCTGTTGCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCAACAATGCCTCCTGAGGCCCTTGAGATCACAAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATAAAGCAGTTTTATGTCAATGTTGAGAGAGAGGAATGGAAGCTGGACACACTCTGTGATCTTTACGAGACATTAGCCATCACTCAGAGTGTCATTTTTGTTAACACCAGAAGGAAAGTTGATTGGTTGACTGACAAGATGAGAAGCCGAGACCACACGGTCTCAGCAACCCATGGAGACATGGACCAGAATACCAGGGACATTATTATGCGCGAATTCCGTTCTGGGTCTTCCCGTGTCTTGATAACCACTGATCTTTTGGCTCGTGGTATTGATGTCCAACAAGTGTCTCTAGTTATAAATTATGATCTCCCTACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGGAGGTTTGGAAGGAAGGGTGTTGCGATCAACTTTGTGACAAAGGATGACGAGAAAATGCTGTTTGACATCCAGAAGTTTTACAATGTGCAAGTTGAGGAGCTGCCTTCAAATGTTGCCGAGCTCCTTTGA 2841 0.4688 MCGDATNWDEDAYRETVLKEREIQTRTVFRTAWAPPYSSNLDTLLVASSDGSVASYSISSSIAASKLKNPFGFVNADPDELLAEPNCYVQAHDGPAYDVKFYGDGEDALLLSCGDDGRIRGWRWKEFSISNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPIPENNAIAVNTQGGSVFAASGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCTQVIDSAKDLKLKGSASWVGCVALDASESWLACSSGRNISLWNLPASECVSKIPTRACVQDMLFDNNQILTVGTDPLLNRFDMNGNILSQIQCAPSSSFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFHCQSGSSNESLDLDLDSSSPPPPPHHRRVLPNWVVVDLSEESTYAVILLHVLFYVKVYEVPEGVRDGAHEVVAAELERFQVGEVVEGVRNGGREKRVKGEVKRFEGALDAHTHFPLCVRHQRNALFLIFSRLRGVDPRSSGNPNSTPFTTHRFFSLTHSPSSQVMAGIAPEGSQFDARQYDTKMNDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVQVEELPSNVAELL 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00681 946 SMART WD40_4 155 190 IPR001680 GO:0005515
Pumo4g00681 946 SMART WD40_4 322 360 IPR001680 GO:0005515
Pumo4g00681 946 SMART WD40_4 243 281 IPR001680 GO:0005515
Pumo4g00681 946 SMART WD40_4 193 232 IPR001680 GO:0005515
Pumo4g00681 946 SMART WD40_4 284 320 IPR001680 GO:0005515
Pumo4g00681 946 SMART WD40_4 14 57 IPR001680 GO:0005515
Pumo4g00681 946 SMART WD40_4 82 123 IPR001680 GO:0005515
Pumo4g00681 946 Gene3D - 782 946 IPR027417 -
Pumo4g00681 946 FunFam Eukaryotic initiation factor 4A-II 561 780 - -
Pumo4g00681 946 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 785 946 IPR001650 -
Pumo4g00681 946 SMART ultradead3 592 789 IPR014001 -
Pumo4g00681 946 Pfam Helicase conserved C-terminal domain 799 907 IPR001650 -
Pumo4g00681 946 SUPERFAMILY WD40 repeat-like 32 363 IPR036322 GO:0005515
Pumo4g00681 946 CDD DEADc_EIF4A 577 775 - -
Pumo4g00681 946 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 573 601 IPR014014 GO:0003724
Pumo4g00681 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Pumo4g00681 946 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 774 IPR014001 -
Pumo4g00681 946 Pfam WD domain, G-beta repeat 250 281 IPR001680 GO:0005515
Pumo4g00681 946 Pfam WD domain, G-beta repeat 196 232 IPR001680 GO:0005515
Pumo4g00681 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 927 IPR027417 -
Pumo4g00681 946 Gene3D - 8 375 IPR015943 GO:0005515
Pumo4g00681 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 232 - -
Pumo4g00681 946 FunFam Eukaryotic initiation factor 4A-III 781 946 - -
Pumo4g00681 946 Gene3D - 563 781 IPR027417 -
Pumo4g00681 946 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 372 IPR042626 -
Pumo4g00681 946 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 720 728 IPR000629 -
Pumo4g00681 946 SMART helicmild6 826 907 IPR001650 -
Pumo4g00681 946 CDD SF2_C_DEAD 786 916 - -
Pumo4g00681 946 Pfam DEAD/DEAH box helicase 598 759 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00681 Pumo-Chr4 8851460 8862282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00681 534 946 Eukaryotic Initiation Factors Gene Family AT1G72730 88.647 0.0 766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00681 4 8851460 8862282 Pumo4g00681 4 8851460 8862282 ECH
Pumo4g00681 4 8851460 8862282 Pumo2g01654 2 31144178 31148318 PCT