Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00678 ATGCCTACTAAAGTAAATAAAGCAGACAATGCTACTGGCATTGGCAGAGAAATGTCTGGAATTAGTTCATCCTCAACTGAACCTAAAATTCTAAAGAATTTCCGGTTTTTATCACTATCAGAGCGTAGTTACATTGGTCTGCAATCATTTAGTCGTAGGAATTCTTTTGAAAATTCTACCAAAAATGAAGAAGAAAATCCAGAAAACTGTGGAGATGATATTGAAAGTATCAGCCTCCACTCATTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAAGAAGAAGTGGAACGACTGCAGCTGGAGTTGCAAAATACTATCGCCATGTACAAACAAGTTTGTGAAGGGCTGGTTGAAACTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAAGAGTAAATGCTTCCCTAAAAAGAGAGGAGATTTTGAGAAAGATTGCTGCTGAAGAGAAAACAAAGTATTTAAAAGTCATGAAGGAACTTGAGGAGGCGAAAAATAAGTTTGCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAAAAACAGAGAATTGTTGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGAAATCAAGATAGCGACGAACTTCTTTGCTGAGGACTTGATAATTGGTGAGGGAGGATATGGGAAAGTTTACAAGTGTAATCTAGATCACACACCAGTAGCTGTAAAGGTTCTGCATCAGGACGCAATCAACAAGAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAACTACATCATCCTAATATGGTGTTGTTACTTGGAGCCTGTCCTGAGAGTGGTTGTCTCGTTTATGAATACTTGGAAAATGGAAGTCTAGAAGACTATCTTCTCAAAAAAAATGGAAAACCACCACTTCCTTGGTTTTTTCGATTTCGTATAGTTTTTGAAATGGCTTGTGGGCTCTCATTCTTGCACAATTCAAAGCCAGAGCCTATTGTCCATCGAGATATAAAACCTGGCAATATCTTGTTAGACAGAAATTATGTGAGCAAAATTGCAGATGTTGGGCTGGCTAAACTCATTGTAGAAGTCGTGCCTGACAACGTCACAGAGTACAGAGAATCAATGCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCCGACCAAAATCAGATGTATATGCTTTTGGAGTTATAACTCTCCAATTGATAACTGGTCGCCATGCACGTGGACTCATTGTGATCGTTGAAGATGCAATTAGAAATGGCTCCTTCCGTGATATTTTAGATCCATCAGCTGGAGATTGGCCACTGGATGAGACAGTGGAATTAGCTCAAATTGCCTTTAAATGCACTGCACTTAGATGCAGAGATAGGCCAGAACTTGATACTGAAGTTCTTCCAGTTCTCGAAAGATTTTCTGATGCGGCAAATGCTAGTGCAAGGATGGGAAGAAATAGTGTGAGTGCGCCAAGCCAGTATTATTGCCCAATACTTCAGGAAATCATGGATGATCCATATGTTGCTGCGGATGGGTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAACTCCAGCATTCTGTGTTAACTCCAAACCACACTTTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGTGACCTTTTGA 1743 0.4022 MPTKVNKADNATGIGREMSGISSSSTEPKILKNFRFLSLSERSYIGLQSFSRRNSFENSTKNEEENPENCGDDIESISLHSFDSIASAQREQLVMQEEVERLQLELQNTIAMYKQVCEGLVETQNQALLLSSESLEETKRVNASLKREEILRKIAAEEKTKYLKVMKELEEAKNKFAKESYERQMAELDVLKESIEKQRIVDTLLSNDRRYRKYTMDEIKIATNFFAEDLIIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPESGCLVYEYLENGSLEDYLLKKNGKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKIADVGLAKLIVEVVPDNVTEYRESMLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIVIVEDAIRNGSFRDILDPSAGDWPLDETVELAQIAFKCTALRCRDRPELDTEVLPVLERFSDAANASARMGRNSVSAPSQYYCPILQEIMDDPYVAADGFTYEYRAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00678 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 510 578 IPR013083 -
Pumo4g00678 580 SUPERFAMILY RING/U-box 504 575 - -
Pumo4g00678 580 SMART serkin_6 226 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00678 580 Pfam Protein tyrosine and serine/threonine kinase 231 482 IPR001245 GO:0004672|GO:0006468
Pumo4g00678 580 Gene3D Phosphorylase Kinase; domain 1 205 298 - -
Pumo4g00678 580 Pfam U-box domain 510 575 IPR003613 GO:0004842|GO:0016567
Pumo4g00678 580 SUPERFAMILY Protein kinase-like (PK-like) 209 481 IPR011009 -
Pumo4g00678 580 SMART Ubox_2 512 574 IPR003613 GO:0004842|GO:0016567
Pumo4g00678 580 PANTHER OS02G0152300 PROTEIN 35 573 - -
Pumo4g00678 580 ProSiteProfiles Protein kinase domain profile. 226 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00678 580 CDD RING-Ubox_WDSUB1-like 510 564 - -
Pumo4g00678 580 ProSitePatterns Protein kinases ATP-binding region signature. 232 253 IPR017441 GO:0005524
Pumo4g00678 580 Coils Coil 152 198 - -
Pumo4g00678 580 Coils Coil 85 105 - -
Pumo4g00678 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Pumo4g00678 580 MobiDBLite consensus disorder prediction 1 24 - -
Pumo4g00678 580 ProSiteProfiles U-box domain profile. 508 580 IPR003613 GO:0004842|GO:0016567
Pumo4g00678 580 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 198 298 - -
Pumo4g00678 580 Gene3D Transferase(Phosphotransferase) domain 1 299 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00678 Pumo-Chr4 8819324 8825124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00678 95 576 Plant U-box Gene Family AT5G57035 63.768 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pumo4g00678 PK_Tyr_Ser-Thr 9.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00678 - - gmx:100805896 1068.53