Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00671 ATGGTTTGGTTTCAATGCGAAGATTGCGGAGACAACCTCAAAAAACCCAAGTTGTCTAGTCACTTCCGAACTTGCTCCGCCTACAAATTGTCGTGCATTGACTGCGGGGAAATATTTGGGCGTGACACCGTTCAGGATCACACGCAGTGTATTACAGAAGCGGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTTTGAACGTTGCAACTGCCAAGCCTAACCAGGATAACAAGCAAAGGCCTGAAGTTGATATTAATGTTGGGTTATCTGAGCGGCCTCCTTGGTTCTGTAGTCTTTGCAATACGAAAGCTACAAGTAAGCAAACACTTCTTCTCCATGCCGATGGAAAGAAACACAGGGCAAAGGCCAGAGCATTCCATGCTTCAAAGCAACAACCAGTTGAGGCAGACAAATCTGCCACTGATGCAAAGGTTGCTGTGGAGACTGCTCCTAATGATGAGAAAAAGAGGAAACTTGAAGCATTGGAGGATGACCTTATTAAGAAAACCAAGAATGACACTTCAGTTGACATGGGAAATGGGGAAGTAATTCAGGGTGAAGAAGCAACAGGAGAGAGCAATTTGAAGAAAGAAGGGAGTGCTGTCAAAAATAAAATAAAATGGAAGAAGTTCATCAAATCAGCCTTGAAATCTCATCCTGATGGAATTTTGAAGATGAAGAAACTGAGAAAAGTTGTCCTCAAAGCACTGCAGGAATCTGGCATTGTAGTGGATGAAGCTGAATTGAGTGAGGCGCTTGAGCAGAAGATCAATTCCAGCTCCAGATTTGCAGTTGAGAACAAGTATGTGCGATTGCTGGCCAAAGATTGA 831 0.4356 MVWFQCEDCGDNLKKPKLSSHFRTCSAYKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPKGQGKTLNVATAKPNQDNKQRPEVDINVGLSERPPWFCSLCNTKATSKQTLLLHADGKKHRAKARAFHASKQQPVEADKSATDAKVAVETAPNDEKKRKLEALEDDLIKKTKNDTSVDMGNGEVIQGEEATGESNLKKEGSAVKNKIKWKKFIKSALKSHPDGILKMKKLRKVVLKALQESGIVVDEAELSEALEQKINSSSRFAVENKYVRLLAKD 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00671 276 SUPERFAMILY beta-beta-alpha zinc fingers 86 127 IPR036236 -
Pumo4g00671 276 Gene3D - 1 50 - -
Pumo4g00671 276 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Pumo4g00671 276 Coils Coil 152 172 - -
Pumo4g00671 276 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Pumo4g00671 276 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Pumo4g00671 276 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
Pumo4g00671 276 Pfam Zinc-finger of C2H2 type 95 119 - -
Pumo4g00671 276 FunFam UBP1-associated proteins 1C 89 132 - -
Pumo4g00671 276 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 273 IPR039999 GO:0003677
Pumo4g00671 276 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Pumo4g00671 276 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Pumo4g00671 276 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Pumo4g00671 276 Gene3D Classic Zinc Finger 89 132 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00671 77 198 C2H2 Transcription Factor Family AT2G19380 41.985 3.88e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00671 K15263 - gmx:100790272 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00671 4 8755908 8758381 Pumo4g00671 4 8755908 8758381 ECH