Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00664 ATGAAGCCATTCTTGTCGAATCATCCTGATACTATGTACAATTATTCACAAGTCGATTGTAGTCATTCAATGGCTCATACTTCTTATCCTTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGACCACAGGTTATTAATCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTGCCAGTTGAGCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTCCACGAGTCTCGGCACCGCCACGCGTTGAATAGGGTTAGGGGATCCGGGGGTCGCTTTCTTAGCGCCAAACAGCTGCAACAGTCTAATGCAGAACTTGTCACTGATGCCCATTCAGGCCTGGACCCTGTCAATGTTTATCAAAAGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAAGAACTGGAGAAAATGCATCTATCACATTCACAGCCATCTCTGGCTTAACAAGTATGTCCGGTAACAGTGTCAATTTCAGGCAGCAGCCCGAGCACAACTTCTTGGGGAACTCCCCATCACAATGCAGTGGGGGACTCATCTTTGGTGGTGGAGCTCCGCAATGTGCTTCAGTGGCCGGTGAGAGAGGTGGAACAAATCAAAATCAAGTTCACTGGTCTGGCAAATCATCCTTGGCTTAG 747 0.4618 MKPFLSNHPDTMYNYSQVDCSHSMAHTSYPCGDPYFGSSIVAYGPQVINQQMVPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQLQQSNAELVTDAHSGLDPVNVYQKKDASEVESHPSRTGENASITFTAISGLTSMSGNSVNFRQQPEHNFLGNSPSQCSGGLIFGGGAPQCASVAGERGGTNQNQVHWSGKSSLA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00664 248 Gene3D - 72 134 - -
Pumo4g00664 248 PRINTS CCAAT-binding transcription factor subunit B signature 75 97 IPR001289 GO:0003700|GO:0006355
Pumo4g00664 248 PRINTS CCAAT-binding transcription factor subunit B signature 106 129 IPR001289 GO:0003700|GO:0006355
Pumo4g00664 248 SMART cbf3 71 132 IPR001289 GO:0003700|GO:0006355
Pumo4g00664 248 ProSitePatterns NF-YA/HAP2 subunit signature. 77 97 IPR018362 GO:0003677|GO:0016602
Pumo4g00664 248 ProSiteProfiles NF-YA/HAP2 family profile. 72 132 IPR001289 GO:0003700|GO:0006355
Pumo4g00664 248 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 10 173 IPR001289 GO:0003700|GO:0006355
Pumo4g00664 248 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 75 129 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00664 Pumo-Chr4 8683508 8690401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00664 16 219 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.029 4.75e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo4g00664 CBFB_NFYA 3.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00664 K08064 - gmx:100792905 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00664 4 8683508 8690401 Pumo4g00664 4 8683508 8690401 ECH