Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00658 ATGGGTGATTTCCAAGGCCCCATCATAGTGTCACCCCCTCCTTCACCCTATTCCTCGGATAAGTCCAGCACAACCATGCTATACTATGGCCTAGTAGTGGTGGGGGTTGCAGCCATGGCATTAGCCCTATACAACTTCATCATCATCAGGCGAAAATTGAGAACTGCCAAAGGAACTTCAACAGTGCTCTCAAGCTTCAAGTACAAAAAAGAAGCAGGAAAAGAAGGAGTTGGGGATGATGATGAATGCCCAGTTTGCTTATCGGGTTTTGAAGAAGGGGAAGAATTGAGGAAGCTGCCACGGTGCAAGCACTGGTTCCACGCACCATGCATAGACATGTGGCTTTACTCTCATTTGGATTGCCCAATTTGTCGAACACCTGTTGGGCAATTCTGCCACCGCTTCCATTCTGGTCCAGGAATGCTGGAATCCGGTGGTGGTGGCGTCTCGGTGTGA 456 0.4934 MGDFQGPIIVSPPPSPYSSDKSSTTMLYYGLVVVGVAAMALALYNFIIIRRKLRTAKGTSTVLSSFKYKKEAGKEGVGDDDECPVCLSGFEEGEELRKLPRCKHWFHAPCIDMWLYSHLDCPICRTPVGQFCHRFHSGPGMLESGGGGVSV 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00658 151 SMART ring_2 83 124 IPR001841 -
Pumo4g00658 151 CDD RING-H2_EL5-like 82 125 - -
Pumo4g00658 151 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 27 128 IPR044675 -
Pumo4g00658 151 SUPERFAMILY RING/U-box 77 131 - -
Pumo4g00658 151 FunFam RING-H2 finger protein ATL52 50 130 - -
Pumo4g00658 151 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Pumo4g00658 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 130 IPR013083 -
Pumo4g00658 151 Pfam Ring finger domain 81 125 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00658 Pumo-Chr4 8627467 8627993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00658 53 128 C3H Transcription Factor Family AT4G33565 52.632 2.55e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00658 - - gmx:102668213 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00658 4 8627467 8627993 Pumo4g00658 4 8627467 8627993 ECH