Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00652 ATGGGGAGAAGCCCTTGTTGCTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCAGAGAATACATTAGGCTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTTCGATGGTTGAATTATCTCAGACCAGATATTAAGAGAGGCAATATAACCTCAGATGAAGAAGAGCTCATCATCAGACTCCACAAGCTCCTGGGAAACAGATGGTCTTTAATAGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGAAAAAAGGTGAAAGATGGCCACCATACCACTGCTCAACTAATCAATGCAAACAACACACAGAATCCAATGCCCTCACCCTCCCTATCTCCTCCTAAACTAGATTCCCATGTTGTCCGTACAAAAGCTACCAAGTCCTCCAAGCTATTATTCCTAAACCCACCCCCTCATCACCCATCAATGCACTTATCCAACAACTCCAAGCCAGAGGCACAAGCAGAAGAAGCAATGCCTGTGGATGCTGTAATAAGTAACCAAATGGAATCTACTACATACGACGATGAAGAAAAAGAACTCTCAACAGATTTGCTCATAGATTTCAACGTGGGGGATATTTGCTTGTCTGATCTTCTCAACTCAGATTTCTCAAACACGTACAATTTCAGCTGCACTGATGTTAGCAACAACGAGCAGTTATCGACTTGTTCGGACCAGCCTGATCCCATGTTATTCTCTGATGAAGTTCTCAAGGACTGGACACACAGCAATTTTCCAGACGAAGCGAATGCTTCCAACAACCTTCATTCTTTCATTTCGTTCCTTGAGTCCAGTGAGGAAACACTAGAAGAATGA 909 0.4312 MGRSPCCSKEGLNRGAWTAHEDKILREYIRLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGHHTTAQLINANNTQNPMPSPSLSPPKLDSHVVRTKATKSSKLLFLNPPPHHPSMHLSNNSKPEAQAEEAMPVDAVISNQMESTTYDDEEKELSTDLLIDFNVGDICLSDLLNSDFSNTYNFSCTDVSNNEQLSTCSDQPDPMLFSDEVLKDWTHSNFPDEANASNNLHSFISFLESSEETLEE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00652 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo4g00652 302 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 230 - -
Pumo4g00652 302 FunFam Transcription factor TT2 70 138 - -
Pumo4g00652 302 CDD SANT 16 61 IPR001005 -
Pumo4g00652 302 Gene3D - 14 66 - -
Pumo4g00652 302 FunFam MYB-related transcription factor 13 66 - -
Pumo4g00652 302 MobiDBLite consensus disorder prediction 161 187 - -
Pumo4g00652 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo4g00652 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo4g00652 302 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo4g00652 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo4g00652 302 SMART sant 66 114 IPR001005 -
Pumo4g00652 302 SMART sant 13 63 IPR001005 -
Pumo4g00652 302 CDD SANT 71 112 IPR001005 -
Pumo4g00652 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo4g00652 302 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pumo4g00652 302 Gene3D - 70 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00652 Pumo-Chr4 8570499 8571889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00652 4 135 MYB Transcription Factor Family AT3G13540 67.164 5.75e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g00652 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00652 K09422 - gmx:100781908 482.256