Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00649 ATGATGAATGGAAGGAACAGCCACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACCCACTTGGACTCTCCTCTCTCCTCAAGACTCTTGCCTCACCAGCCTCAACACTTTGGGTGGAACTATTTGCCAATGGGGTTGGGGAGGAAAATAGACCCGGAGCCAGGGAGGTGCAGAAGAACAGATGGGAAGAAGTGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACGACAGCAGCAACAAACACAGATGCCTCAGCCCCAACAATCTTATCAATCACCAAAAACAGTCCTGCACTCTCCCCAACCACTCATAGTCATTCTCTCTCCGCGTCCTCTCATGACACCTACCATCATCATCAGCAGCATCACCACCACCCTCAACAACATTCCTCCCACTCCTTCCTCTATCATCATTCTAGGCCCTCTTCCGGTGTTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGTATGTGTATGGACTGAAAGAGGAGGTGGATGAGCATGCCTTCTTCACGGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCGAAACAGAGGAGTTGCTCTGGTTTATCCAATGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAGCAGCCACAGCAAGATCAGGGTTGCTACATATCAGGCAGTGATGTCAAGTGTGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGATTCTTTGATGAATGGCCTCCCAAAAGCAGAGGATCGTGGCTTGATTTGGATGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACGTCTACTCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGCTGA 1149 0.4761 MMNGRNSHRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHQPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTAATNTDASAPTILSITKNSPALSPTTHSHSLSASSHDTYHHHQQHHHHPQQHSSHSFLYHHSRPSSGVALSFQDNSAPLFLDTASCSQNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQPQQDQGCYISGSDVKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSTHDFATFSSTTQRDG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00649 382 PANTHER GROWTH-REGULATING FACTOR 5 10 370 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pumo4g00649 382 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo4g00649 382 MobiDBLite consensus disorder prediction 122 163 - -
Pumo4g00649 382 MobiDBLite consensus disorder prediction 170 184 - -
Pumo4g00649 382 Pfam WRC 80 122 IPR014977 -
Pumo4g00649 382 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo4g00649 382 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo4g00649 382 ProSiteProfiles WRC domain profile. 79 123 IPR014977 -
Pumo4g00649 382 MobiDBLite consensus disorder prediction 106 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00649 Pumo-Chr4 8548137 8550192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00649 4 122 GRF Transcription Factor Family AT3G13960 69.748 5.90e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pumo4g00649 WRC 8.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00649 - - gmx:100807835 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00649 4 8548137 8550192 Pumo4g00649 4 8548137 8550192 ECH
Pumo4g00649 4 8548137 8550192 Pumo2g01689 2 31757906 31760130 PCT