Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00633 ATGTTTTTTCACTCGCGGAGCTCAAGATCATCACGCAGAGTTTTCTCTTCGAGTAACTTTCTCGGAGAAGGAGGGTTTGGACCCGTGCATAAGGGCTTCATTGATGACAAGCTTAGGCCCGGTCTCGAGGCTCAACCGGTGGCCGTCAAGCTCTTGGACTTGGACGGTTCTCAGGGCCATAAAGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCATCCCCATCTGGTGAAGTTGATTGGATATTGCTGTGAAGAAGAACACAGGCTTCTGGTATATGAATATTTACCACGAGGCAGCTTAGAGAACCAACTATTTAGAAGATATACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCGAAAAAACCAGTCATCTATAGAGATTTCAAAGCTTCTAACATCTTGTTAGACTCGGATTACAATGCAAAGCTTTCTGATTTTGGCTTGGCAAAAGATGGTCCCGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTACGCGGCCCCAGAATACATCATGACAGGACACTTGACAGCAATGAGTGATGTGTACAGTTTTGGAGTTGTTCTCTTGGAGCTTCTAACAGGAAGAAGGTCAGTGGACAAAGGGCGTCCACCAAGAGAACAGAACCTCGTGGAATGGGCCAGGCCTGTTTTGAATGATTCCCGGAAACTTAGCAGAATAATGGATCCAAGACTTGAGGGTCAGTATTCTGAGGTAGGGGCAAGAAAAGCAGCTGCATTGGCTTACCAATGCCTCAGCCACAGGCCAAGGAGTAGACCCTTGATGAGCACAGTGGTTAATGTTCTTGAGCCACTTCAGAACTTTGAAGATCTTCCAATTGGACCCTTTGTTTACACCGTTCCAGCTGAACAACAAAATGAAGTGGCAAAAGAGAGTGAAACACCTAAGGACAGGAAGAGGGAAAATGGTCACCATCATCACCGGCATCATCATCATCGCCACAATGGCCATAGGCATCATCCACTTAAATCGCCCAGGACACCAATGTCATCAGATCAGTCACAGAATGATGAACACCGAAATGGTAGAAGAAGTGGGTCTAATTCACCTGACACCTCTATTGCATCAGAAGCGCAAGGAAGCATGGGTTAG 1182 0.4645 MFFHSRSSRSSRRVFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPPREQNLVEWARPVLNDSRKLSRIMDPRLEGQYSEVGARKAAALAYQCLSHRPRSRPLMSTVVNVLEPLQNFEDLPIGPFVYTVPAEQQNEVAKESETPKDRKRENGHHHHRHHHHRHNGHRHHPLKSPRTPMSSDQSQNDEHRNGRRSGSNSPDTSIASEAQGSMG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00633 393 Pfam Protein tyrosine and serine/threonine kinase 19 291 IPR001245 GO:0004672|GO:0006468
Pumo4g00633 393 ProSiteProfiles Protein kinase domain profile. 15 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00633 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Pumo4g00633 393 FunFam Probable serine/threonine-protein kinase PBL8 98 307 - -
Pumo4g00633 393 Gene3D Phosphorylase Kinase; domain 1 21 98 - -
Pumo4g00633 393 CDD STKc_IRAK 21 295 - -
Pumo4g00633 393 MobiDBLite consensus disorder prediction 376 393 - -
Pumo4g00633 393 PANTHER OS01G0588500 PROTEIN-RELATED 8 296 - -
Pumo4g00633 393 Gene3D Transferase(Phosphotransferase) domain 1 99 301 - -
Pumo4g00633 393 MobiDBLite consensus disorder prediction 315 393 - -
Pumo4g00633 393 MobiDBLite consensus disorder prediction 331 354 - -
Pumo4g00633 393 SUPERFAMILY Protein kinase-like (PK-like) 14 293 IPR011009 -
Pumo4g00633 393 FunFam Serine/threonine-protein kinase BIK1 2 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00633 Pumo-Chr4 8312466 8315154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00633 3 330 Glycoside Hydrolase AT3G07070 50.602 7.49e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo4g00633 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00633 - - gmx:100799411 716.457