Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00620 ATGGCCGCTGTTCGCCTCCTTCTCCTCCTCCTCTTCTTCTTCTTTTTCCCTCTTTCCTCATTCTCCCTCCCTGAAAACGAAGCCCTCCTCACCCTCAAAAAATCCTTCTCCAACCCTGAAACGGCCCTCTCCTCCTGGCTCCCCAACCAGAACCCTTGCTCCTCCAGGTGGCTCGGCGTCATCTGCTTCAACAATATCGTCACCAGCCTCCACCTCACCGACCTCTCCCTCTCCGGCACCATCGACGTCGACGCCCTCACCCAAATCCCCACTCTCCGCTCCGTCAGCTTCATCAACAACTCCTTCTCCGGTCCAATCCCTCCCTTCAACAAACTCGGAGCCCTCAAGGCCCTCTACTTAGCCAACAACCAATTCTCAGGTCCTATCCCTTCGGACTTCTTCTCCCAGCTAGCTTCCCTGAAAAAAGTATGGATCTCCAACAACAAGTTCTCCGGCCCCATCCCCTCTTCCCTGTCCAACCTCCGCTTCCTCACCGAGCTCCACCTCGAGAACAACGAGTTCTCTGGCCCGGTGCCGGAGCTCAAGCAGGACATCAAGTCCTTGGACATGTCGAACAACAAGCTCCAAGGCGAAATCCCCGCCGCCATGTTGAGGTTCGACGCGAAAGCCTTCTCCAACAACGAAGGGCTCTGCGGGAAGCCGTTGGATAAAGAGTGCGAAGCGAACGGTGCGCAAGGGTCGAGCTGGGGGATGAAGGTGGTTATTCTCCTCATCGTTGCTGCTGTTTTGGCGGGGGTTTTTGTGATGGTGCGGTCCAAGCGCCGACGCGACGATGACTTCAGCGTGATGAGCAGGGATCACGTGGACGAGGTGGTGCAAGTGCACGTGCCGAGCTCTAACCACAGTAGCAAGGCCTCCGGATCCGAGGGGAGCAGGAAGGAGTCTTCTTCGTCCTCCTCCAAGAAAGGGTCGTCGCGGGGCGGCATTGGTGACCTTGTGATGGTGAACGATGAGAAGGGCGTGTTTGGCTTGCCCGATTTGATGAAGGCTGCGGCGGAGGTTCTCGGGAACGGTGGGCTGGGTTCCGCGTATAAGGCTGCCATGGCTAATGGCCTTTCTGTGGTGGTCAAGCGGATGCGCGAGATGAATAAAGTCAGCAGAGACATCTTTGACGCCGAGATGAGACGCTTTGGGAGACTCAGAAACCCTAACATCTTGACGCCTCTGGCTTACCATTACCGCAAGGAGGAAAAGCTCTTTGTCACGGAATACAAGCCCAAAGGAAGCTTGTTATACGTCTTGCACGGTGACAGAGGATCGAGTCATGCGGACCTGAACTGGCCAATCCGTTTGAATATTGTGAAGGGAATTGCAAAGGGGTTGGCGTTTATCTATTCTGAATTTGCTAACGAAGACCTGCCACATGGAAACCTGAAATCCAGCAATGTTCTACTATCTGATAATTATGAGCCTCTCCTAAGTGACTTTGCCTTTCATCCACTCATCAACCCCAACTACGCCATACAGACAATGTTTGCATACAAAACACCCGATTACGTATCATACCAGCATGTTTCACAGAAGACCGACGTTTATTGCCTCGGAATTATCGTTCTTGAAATCATCACTGGGAAATTCCCCTCTCAGTATCACAGTAATGGCAAGGGTGGGACCGACGTAGTGCACTGGGTGTTCACTGCAATTTCTGAGAGAAGAGAGGAAGAATTGATTGATCCAGAGTTAAAAAGCAGTCACCCAAACTCCCTCAATCAAATGCTGCAACTTCTCCAAGTAGGGGCTGCTTGCACGGAGAGCAACCCCGACCAACGACTTAACATGAAGGAAGCCATTAGAAGGATAGAGGAGGTTCAGGTTTAA 1839 0.528 MAAVRLLLLLLFFFFFPLSSFSLPENEALLTLKKSFSNPETALSSWLPNQNPCSSRWLGVICFNNIVTSLHLTDLSLSGTIDVDALTQIPTLRSVSFINNSFSGPIPPFNKLGALKALYLANNQFSGPIPSDFFSQLASLKKVWISNNKFSGPIPSSLSNLRFLTELHLENNEFSGPVPELKQDIKSLDMSNNKLQGEIPAAMLRFDAKAFSNNEGLCGKPLDKECEANGAQGSSWGMKVVILLIVAAVLAGVFVMVRSKRRRDDDFSVMSRDHVDEVVQVHVPSSNHSSKASGSEGSRKESSSSSSKKGSSRGGIGDLVMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNPNILTPLAYHYRKEEKLFVTEYKPKGSLLYVLHGDRGSSHADLNWPIRLNIVKGIAKGLAFIYSEFANEDLPHGNLKSSNVLLSDNYEPLLSDFAFHPLINPNYAIQTMFAYKTPDYVSYQHVSQKTDVYCLGIIVLEIITGKFPSQYHSNGKGGTDVVHWVFTAISERREEELIDPELKSSHPNSLNQMLQLLQVGAACTESNPDQRLNMKEAIRRIEEVQV 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00620 612 SUPERFAMILY Protein kinase-like (PK-like) 340 607 IPR011009 -
Pumo4g00620 612 Pfam Protein kinase domain 340 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00620 612 Gene3D Phosphorylase Kinase; domain 1 317 411 - -
Pumo4g00620 612 MobiDBLite consensus disorder prediction 280 318 - -
Pumo4g00620 612 FunFam Nuclear pore complex protein NUP107 23 180 - -
Pumo4g00620 612 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 611 IPR046959 -
Pumo4g00620 612 ProSiteProfiles Protein kinase domain profile. 336 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00620 612 Gene3D Transferase(Phosphotransferase) domain 1 413 612 - -
Pumo4g00620 612 MobiDBLite consensus disorder prediction 282 312 - -
Pumo4g00620 612 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Pumo4g00620 612 Gene3D Ribonuclease Inhibitor 134 182 IPR032675 -
Pumo4g00620 612 Gene3D Ribonuclease Inhibitor 24 133 IPR032675 -
Pumo4g00620 612 SUPERFAMILY L domain-like 23 204 - -
Pumo4g00620 612 Gene3D Ribonuclease Inhibitor 186 223 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00620 Pumo-Chr4 8187173 8190092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00620 1 612 Receptor kinase-like Gene Family AT3G42880 51.730 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo4g00620 Pkinase 2.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00620 - - gmx:100816925 1033.86