Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00617 ATGTCGAGCTCATCGGAGTATTCGGTATTTTCCGGTCACCGGCCAGCGAAGTCGCCGGCGGAGAAATCCTCGTTCTCTCAGACTTGTAGCCTATTGAGCCAGTACCTCAAGGAAAAGGGCACCTTCGGAGACCTTACCCTCGGGATGACATGCACCGCCGAAACAAACGGTTCCCCTGAGACATCATGTCAATCTGCAACAACTACCATGGAGTTGTTTCCCACGATCATGACACAACGGAACCCAACTACCATGGATTTCCTATCTCACCAGGGTGCTTATCCTCACCACTCAGAGCTTCCAACCATGGTTGAATCAAGTGCATTTAACGCTATGGAGAAGGAGCCTAAAGCTGCTCAGTTGACAATCTTTTATGCTGGGCAAGTTGTTGTGTTTGATGATTTTCCTGCTGAAAAAGTGGAGGAGATAATGTCATTAGCCAGCAAGGGAATATCCCAAAGCCAAAACTCCTCTGCATATGCTCAAACTCATAACCAGCAAGGGAATCATCCTTCCTTTGTTCCTAATGTCCCCCCTCAAGCACCATCCAGACCAATTGTTTGTGATCTGCCAATTGCTAGGAAAGCTTCACTTCATCGGTTCCTTGAGAAGAGAAAAGATAGAATTGCTGCCAAAGCGCCATATCAAATAAACAATCCTAACTCTGCTCCAAATAAGCCGGCTGAATCCATGTCATGGCTTGGATTAGGATCTCAATCAACACAAATCTGA 732 0.4658 MSSSSEYSVFSGHRPAKSPAEKSSFSQTCSLLSQYLKEKGTFGDLTLGMTCTAETNGSPETSCQSATTTMELFPTIMTQRNPTTMDFLSHQGAYPHHSELPTMVESSAFNAMEKEPKAAQLTIFYAGQVVVFDDFPAEKVEEIMSLASKGISQSQNSSAYAQTHNQQGNHPSFVPNVPPQAPSRPIVCDLPIARKASLHRFLEKRKDRIAAKAPYQINNPNSAPNKPAESMSWLGLGSQSTQI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00617 243 MobiDBLite consensus disorder prediction 212 243 - -
Pumo4g00617 243 ProSiteProfiles Tify domain profile. 114 149 IPR010399 -
Pumo4g00617 243 Pfam Jas motif 191 216 IPR018467 -
Pumo4g00617 243 MobiDBLite consensus disorder prediction 215 243 - -
Pumo4g00617 243 Pfam tify domain 115 148 IPR010399 -
Pumo4g00617 243 MobiDBLite consensus disorder prediction 155 174 - -
Pumo4g00617 243 MobiDBLite consensus disorder prediction 1 23 - -
Pumo4g00617 243 MobiDBLite consensus disorder prediction 155 180 - -
Pumo4g00617 243 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 227 IPR040390 -
Pumo4g00617 243 SMART tify_2 114 149 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00617 Pumo-Chr4 8164115 8166364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00617 1 239 Tify Gene Family AT1G19180 44.788 4.47e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo4g00617 tify 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00617 K13464 - gmx:100802800 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00617 4 8164115 8166364 Pumo4g00617 4 8164115 8166364 ECH