Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00616 ATGCAGCCACAGAGGTTAAGGCAGCATGCCATGATGCAACCCTCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTTTATGTAGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATCAGGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTCGATCGCAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTTAATATTTTTGTCGGTGACCTTAGTCCTGAGGTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTACTTGTTCTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAATGCCAGTGATGAAAAGCAGAGTTCGGATTCGAAAAGTGTCGTGGAGTTGACCAGGTGGAACATCCGAAGAAGGCCAGGAAACAACCAATGA 726 0.4642 MQPQRLRQHAMMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANASDEKQSSDSKSVVELTRWNIRRRPGNNQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00616 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Pumo4g00616 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Pumo4g00616 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Pumo4g00616 241 Gene3D - 126 223 IPR012677 -
Pumo4g00616 241 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Pumo4g00616 241 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 220 - -
Pumo4g00616 241 SMART rrm1_1 47 116 IPR000504 GO:0003723
Pumo4g00616 241 SMART rrm1_1 132 205 IPR000504 GO:0003723
Pumo4g00616 241 Gene3D - 39 125 IPR012677 -
Pumo4g00616 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Pumo4g00616 241 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Pumo4g00616 241 CDD RRM2_PUB1 130 209 - -
Pumo4g00616 241 SUPERFAMILY RNA-binding domain, RBD 123 219 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00616 Pumo-Chr4 8145348 8148210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00616 47 209 Eukaryotic Initiation Factors Gene Family AT3G16380 34.524 9.47e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00616 K13201 - gmx:100813736 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00616 4 8145348 8148210 Pumo4g00616 4 8145348 8148210 ECH