Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00612 ATGGTGAAGCCGAGCAACGAAAAGCCAGAGGAGGAGCATAGCGATTCAAAGTACAAAGGGGTCCGAAAGAGAAAATGGGGCAAATGGGTATCCGAAATAAGACTACCCAACAGTCGTCAGCGGATTTGGTTGGGATCCTACGACTCCGCCGAGAAGGCCGCGCGTGCCTTCGACGCGGCAATGTTCTGCTTACGTGGCCGCAACGCCAAGTTCAATTTCCCCGACAACCCACCCGACATCCCCGGCGGGAGGTCCATGACGCCGACGCAGATTCAGATCGCCGCCGCCCAGTTCGCCAACGCGGGGCCCCACGAGGGCCATTCGGGTCGACCCGAACACTCCCCGATGGAATCTCCTTCGCCTTCTGTTTCGGAAGGGACCGTTCAAACGGACAGTGACGTCACCACACTTAACGGTTCGCTAACGGATTTGTTCACGCCCGTGGGGTCCAGTGGTTACGCATCCGATTACGGGATTTTCCCGGGTTTTGATGATTTCAGTGGTGATTTTTACGTGCCGGAAATGCCGAATGTAAATTACGGAGAAGAAAACGGGGAAGGGTTCATAGTTGATGACTCTTTCTTGTGGAATTTTTGA 597 0.5461 MVKPSNEKPEEEHSDSKYKGVRKRKWGKWVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGRNAKFNFPDNPPDIPGGRSMTPTQIQIAAAQFANAGPHEGHSGRPEHSPMESPSPSVSEGTVQTDSDVTTLNGSLTDLFTPVGSSGYASDYGIFPGFDDFSGDFYVPEMPNVNYGEENGEGFIVDDSFLWNF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00612 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 126 - -
Pumo4g00612 198 MobiDBLite consensus disorder prediction 1 21 - -
Pumo4g00612 198 MobiDBLite consensus disorder prediction 101 133 - -
Pumo4g00612 198 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Pumo4g00612 198 MobiDBLite consensus disorder prediction 115 133 - -
Pumo4g00612 198 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Pumo4g00612 198 SUPERFAMILY DNA-binding domain 16 76 IPR016177 GO:0003677
Pumo4g00612 198 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Pumo4g00612 198 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Pumo4g00612 198 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Pumo4g00612 198 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Pumo4g00612 198 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Pumo4g00612 198 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00612 Pumo-Chr4 8103301 8104309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00612 16 198 AP2-EREBP Transcription Factor Family AT1G19210 51.596 2.29e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g00612 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00612 - - gmx:732656 361.303