Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00611 ATGGCAGCCTCTCAGCTCGCTGCATCATTGAGGAACTTGCCTGCATTTGAAAGGTTTCAACCTTCAACGCTTCGATTTCCTTCTGTTGGGCACGTCAAAATTGGCACACTCACGCAAACATCGTTTCCCTCTTTCGTTGTCAAAGCCGCCACTGTTGTCGCCCCCAAGCACACCACTGTTAAGCCTCTGGGTGATAGAGTACTGGTAAAAATTAAGGATGCAGAGGAGAAGACTGCAGGTGGGATTTTACTGCCAGCAACTGCTCAAGGCAAGCCTCAAGGGGGTGAAGTGGTTTCTGTTGGAGAAGGGAAGTCAGTTGGGAATAACAAAGTGGATATTAGTGTGAAGACTGGTGTGCAAGTTGTGTATTCAAAGTATGCTGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGACGATGACATCATTGGTATCCTTGAAACTGATGAGGTCAAGGATCTTAAACCCTTGAACGATAGAGTCTTGATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGAGGTTTGTTGCTCACAGAGGCAACCAAGGAGAAGCCATCTATTGGAACAGTGATAGCAGTTGGTCCGGGGCCTCTGGATGAGGAAGGTAACAGAAAACCATTGTCCGTCACGCCTGGGAATACAGTTCTGTACTCCAAATATGCGGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTACATTGCCTTGAGGGCCTCAGATGTCATGGCTATCCTGTCCTAG 756 0.4722 MAASQLAASLRNLPAFERFQPSTLRFPSVGHVKIGTLTQTSFPSFVVKAATVVAPKHTTVKPLGDRVLVKIKDAEEKTAGGILLPATAQGKPQGGEVVSVGEGKSVGNNKVDISVKTGVQVVYSKYAGTEVEFNGSKHLILKDDDIIGILETDEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSVTPGNTVLYSKYAGNDFKGKDGSDYIALRASDVMAILS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00611 251 FunFam 10 kDa chaperonin 155 251 - -
Pumo4g00611 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Pumo4g00611 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Pumo4g00611 251 PRINTS 10kDa chaperonin signature 158 173 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 PRINTS 10kDa chaperonin signature 237 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 PRINTS 10kDa chaperonin signature 215 227 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 PRINTS 10kDa chaperonin signature 180 201 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
Pumo4g00611 251 FunFam 20 kDa chaperonin, chloroplastic 53 152 - -
Pumo4g00611 251 SUPERFAMILY GroES-like 58 151 IPR011032 -
Pumo4g00611 251 CDD cpn10 59 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 155 249 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pumo4g00611 251 Gene3D GroES chaperonin 53 152 IPR037124 GO:0006457
Pumo4g00611 251 Gene3D GroES chaperonin 153 251 IPR037124 GO:0006457
Pumo4g00611 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00611 Pumo-Chr4 8088819 8092216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00611 1 251 Calmodulin-binding Proteins AT5G20720 73.047 3.08e-131 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00611 K04078 - gmx:100804915 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00611 4 8088819 8092216 Pumo4g00611 4 8088819 8092216 ECH