Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00610 ATGAAGGCTCCATCCAATGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACAATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCTTCAATGCAAAAGGAGACTGACTTCATTCCCAGTTACCCTAACCTTCCTTCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAAACTGACGAGGTGTATGCACAGATGACCCTTCAACCTGTACACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGTCAACCCACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTATTCAATGCAACCTCCAGCTCAGGAGCTTGTAGCCAAGGATTTGCACGACAATACATGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTTTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCACCTTCTTTTAGGTATAAGGCGTGCTAATAGACAGCAACCAGCACTCTCTTCATCAGTGATATCTAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCTGCTCATGCTGCTGCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCATTAGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACCGAGGAGTCTGGGGTACGTAGATATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCCGATGGAAAAACTCACAGTGGCGCAATATTCAGGTTGGATGGGACGAATCAACAGCTGGTGAACGCCCCAGTAGAGTTTCAATTTGGGAAATTGAACCAGTGGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGATGAGTCAGATATGGAAAATGCTTTCAAGAGAGCTATGCCGTGGCTGGGTGGAGATGACTTTGGCATGAAGGATGGCTCAAGTTCAATCTTTCCTGGTTTTAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAATCAGCTCTCTGCTGCTCAATCAGGATGTTTCCCATCCATGCTTCCATCTAATACCCTTCAGGGTAACCTTAGCACTGATGACCCTTCCAAGTTATTGAGCTTTCAAGCTCCTGTCCTCTCTACCCCAAGTCTTCAATTAAACAAACCTAATCTACCAAATCAAATCAACCAGTTGCAACAGTCCCAAATGTCATGGCCTCAGCAGCAACAACAACAGCAGCAACAACAACAGCAGCAACAGCAGCAGCTACAGTCATTGATGCAAATACCAATGAACCAGCTCCAGCAGCAGAGGCAACAGCAGCTGCCTGAACCACAAAACCTGCCATTGCTGCAGCAACTGCCTCAGCAGCTAGGACAGCAGCCCCAGAAACAGCAACAGTCAAGTCAACATGCTACTATCATGAATAATGGGGTAGTTGCCTCTGACCAGATTACAAATCAGTTTGTACAACAACCAATGGCATATGGTCAGCTTCAGCAACAACAATTACTCTCAGGAGGTATCCAACCCCAGCAAGGTATCCAGTCAGCTAGTAAGAATACATTCCCATTGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAGCAACAACAGACACAATTGCAACAATCTCCACTGCAGTTGTTGCAACAAAACCTGCCACAGAGAGCACCACAACAGCCTCCAGCAACTCAAATGTTACAGCAAAACTCCTCAGAGCAACAACTCCACCTACAATTGCTACAGAAATTGCAGCAGCAGCAACAGCAACAACAACAACTTCTTTCCGCGTCTACCCCACTTTTGCAGTCTCAGCTTCTGCAACAACAAAATACTCACCAACAAAACCAGCAATTACCACAGCCCTTGCCGCCTATCTCTCAGCATCAGCCTCAACAGCTTGGCAATAATGCATTCTCAACAGAGAAGCTTCTCAACAGCAACAACTTCTCTTCTTCAACTCTTATGCAGTCACAACAGCTTTTAATGAACCAGCCCCAGAATACACAGAAATCACTTACCATCACTAGAGCTCCCTCTACACTAACTGATGGAGATGCCCCATCATGCTCAACCTCTCCATCTACTAATAACTGCCAAGTGTCTCCTCCAAACCTCCTGAAAAGAAATCAGCAACTACCAGCCACATTAGGGGGGAGTTTGATAGTTGAGCCCACTAGTAATCTGATACAGGAGTTTCACAGTAAGCCTGACATGCAGATCAAACATGAGTTGCTCAATGTAAAAGGACCTGACCAGTTGAAGTATAAAGGGGCAATCACTGATCAGCTGGAAGTTTCTTCTTCTGGAACATCTTACTGTCTTGATCCTGGTAATGTCCAGCAGAACTTGCCACTTTCCAACTTCTGCATGGAAGGGGATGTCCAATCACACCCAAGAAACAGTTGTTTACCATTTGACTCTAATCTGGATGGTCTAACCCCTGATACTATGCTTCTAAGGGGTTATGACTCTCAAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGACTGCCAAACATGCCTTTTAAGCCGGGTTGCTCAAGTGATGTTGGCCTGAATGATACTGGGGTTCTGAATAATAATAATGGCTTGCGGGCTGCTAACCAAACTCCACGAATGAGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTAGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCGCTAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCGTGGGATGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTCCCAATCCCCAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGAAGATAACTCAGCTGCCTCGTTTAATAGATCCTCAAATGTAGCAAGAGCAGATTCCCTTACTACTAATGCCACAGATCCTATACCTTTGGAATCAGCTTTTCTTGTGGATGTTTGA 3465 0.445 MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVHKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENAFKRAMPWLGGDDFGMKDGSSSIFPGFSLVQWMSMQQNNQLSAAQSGCFPSMLPSNTLQGNLSTDDPSKLLSFQAPVLSTPSLQLNKPNLPNQINQLQQSQMSWPQQQQQQQQQQQQQQQQLQSLMQIPMNQLQQQRQQQLPEPQNLPLLQQLPQQLGQQPQKQQQSSQHATIMNNGVVASDQITNQFVQQPMAYGQLQQQQLLSGGIQPQQGIQSASKNTFPLTSLPQDSQFQQQIDQQASLLQRQQQQQQTQLQQSPLQLLQQNLPQRAPQQPPATQMLQQNSSEQQLHLQLLQKLQQQQQQQQQLLSASTPLLQSQLLQQQNTHQQNQQLPQPLPPISQHQPQQLGNNAFSTEKLLNSNNFSSSTLMQSQQLLMNQPQNTQKSLTITRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQLPATLGGSLIVEPTSNLIQEFHSKPDMQIKHELLNVKGPDQLKYKGAITDQLEVSSSGTSYCLDPGNVQQNLPLSNFCMEGDVQSHPRNSCLPFDSNLDGLTPDTMLLRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGLPNMPFKPGCSSDVGLNDTGVLNNNNGLRAANQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGGNVPIPNQACSGTDSGNAWRGQYEDNSAASFNRSSNVARADSLTTNATDPIPLESAFLVDV 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00610 1154 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Pumo4g00610 1154 FunFam Auxin response factor 993 1087 - -
Pumo4g00610 1154 CDD B3_DNA 125 226 IPR003340 GO:0003677
Pumo4g00610 1154 ProSiteProfiles PB1 domain profile. 998 1091 IPR000270 GO:0005515
Pumo4g00610 1154 FunFam Auxin response factor 289 361 - -
Pumo4g00610 1154 FunFam Auxin response factor 124 228 - -
Pumo4g00610 1154 Pfam AUX/IAA family 995 1084 IPR033389 -
Pumo4g00610 1154 Gene3D - 994 1087 - -
Pumo4g00610 1154 SUPERFAMILY CAD & PB1 domains 1011 1076 - -
Pumo4g00610 1154 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo4g00610 1154 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 566 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo4g00610 1154 SMART B3_2 126 228 IPR003340 GO:0003677
Pumo4g00610 1154 MobiDBLite consensus disorder prediction 710 735 - -
Pumo4g00610 1154 Coils Coil 496 516 - -
Pumo4g00610 1154 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Pumo4g00610 1154 Gene3D - 289 360 - -
Pumo4g00610 1154 MobiDBLite consensus disorder prediction 781 808 - -
Pumo4g00610 1154 Gene3D - 123 227 IPR015300 -
Pumo4g00610 1154 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00610 Pumo-Chr4 8081719 8089223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00610 1 487 B3 DNA Binding Superfamily AT5G20730 81.452 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo4g00610 AUX_IAA 5.7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00610 K14486 - gmx:100816054 1714.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00610 4 8081719 8089223 Pumo4g00610 4 8081719 8089223 ECH