Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00589 ATGTCAATGTCAATGTCAATGTCCATGAGTTGTATTGTTTTCTTGTCTTGCATGTTTTATGGTGTTTCTGCACTCACCTCCGATGGGGTGACTCTCTTGTCACTCTTGAGGCACTGGACATCCGTGCCTCCTTCCATAAACACCACCTGGCTTGCCTCTGATACCACTCCATGCTCCTCCTGGGTAGGAGTACAATGTGACCATGCCCACCATGTGGTCAACCTTACCCTCCCAGATTATGGAATTTCTGGTCAATTAGGACCTGAAATTGGAAATTTAAGTCGCCTACAGTACTTAGAACTTGCTGGAAACAACCTTATTGGCCAAATTCCTGACGCCTTCAAAAACTTGCACAACCTCAAGTTACTCAGCCTTCGAAATAATCAACTGTCTGGTGAAATTCCACATTCCTTGACTCAAATCCCTCAAGTAAATCTTGTTGATCTGTCTAATAACAGTTTAAGCGGATCCATCCCCACAAGTATTGGGAACATGACCGAGCTCTTGCAGTTGTATCTTCAGAGTAACCACTTGTCTGGGACAATTCCCTCATCCATTGGGAACTGCACTAAATTACAAGAATTGTTTTTGGATCAAAATCAGTTGGAGGGTATCCTGCCTCAGAGTCTAAACAATCTCAACAATCTTGCTTCTTTTGATGTCTCCAGAAATAGACTTGAGGGTACCATTCCTTTGGGTTCTGGCAGTTGTAAAAATTTACAGTTTTTGGATCTCTCATTCAATGACTTTAGTGGAGGCCTTCCCTCAAGCTTGGGGAACTGTACTGGTTTATCAGAATTTGCTGCCGTGAACTGCAATTTGGATGGGAATATTCCTCCCTCCTTTGGCCTACTGACCAAGCTTTCTATTCTATACCTTCCTGAGAACAATTTATCTGGAAAAATACCTCCAGAAATTGGCAACTGCATGTCTTTGACAGGGTTACACCTGTATTCCAATCAACTTGAGGGAAACATTCCAAGTGAACTGGGAAAACTAAGAAAACTAGTGGATCTTGAATTGTTTTCAAATCAATTGACGGGTGAAATTCCACTTAGCATCTGGAAGATTAAATCTCTGGAGCATCTCCTTGTGTATAATAATAGTCTCTCTGGGGAACTGCCTTTGGAGATGACGGAGCTCAAGCATCTGAAAAACATCTCATTGTTTAACAACCAGTTCTCCGGAGTCATACCTCGAAGCTTGGGAATTAACAGCAGTTTAGTTCAGTTGGACTTTACAAATAATAAATTCACTGGCAACATCCCACCAAATCTGTGTTTTGGCAAGAAGTTAATCATCCTAACAATGGGCTTCAATCAACTTCAAGGGCCTATACCCTCAGAGCTAGGGAACATTGTCAAACTTCGGACTTTGAATCTCGCTCACAACAACTTAGAAGGTCCTTTGCCCTCTCAGCTGTCAAAGTGTACCAAAATGGACAGGTTTGATGTAGGGTTTAATTTCCTAAATGGTTCGTTGCCATCAAGTCTGCAGAGCTGGACAGGGCTAACCACATTAATTTTGAGTGAGAATCACTTTAGTGGGGGCCTCCCAGCTTTCTTGTCGGAATTTAAAATGCTTTCTGAACTACAACTTGGTGGCAATATGTTTGGAGGCAGAATTCCTAGATCGGTTGGAGCATTGGAGAATTTGATGTATGGTTTGAATCTAAGTTCAAATGGGCTGATAGGTGACATTCCTGTAGAGATTGGGAACCTGAAAATTTTGCAAAGACTGGATCTATCTGAGAACAATTTGACAGGAAGCATAGAAGTTCTTGGTGAACTCCTCTCCTTAGTTGAACTCAATATTTCATACAATTCTTTTCATGGTCGTGTACCAAAGATGCTCATGAAGTTGCTTAATTCTCCCTTGTCATCATTTTTGGGCAATCCTGGCCTATGTATCAGATGTTCAGCGTCAGATGGCTTGGCTTGCACTGAAAGAAGCTCTATAAAACCATGTGATGACAAATCTACTAAACAGAAAGGCCTCAGTAAAGTTGAAATTGTGATGATAGCTCTTGGGTCCTCAATATTTGTTGTTTTGCTGTTGTTGCTGGGATTAGTTTATATTTTTGATTTTGGCAGAAAAGCTAACCAGGAAGTCCATATCTCTGCTGAAGGGGGTTCTTCTTCCCTTCTTAACAAAGTCATGGAGGCTACAGCAAACCTAAATGATCGGTATATTATTGGCAGAGGAGCCCATGGAGTTGTTTATAAAGCCCTGATAGGTCCAGACAAAGCTTTTGCTGCGAAGAGGATAGGTTTTGCTGCGAGCAAAGGTAAGAACTTGAGCATGGCCAGAGAAATTGAAACCCTTGGAAAAATTCGGCATCGGAATCTGGTCAAATTGGAAGACTTTTGGTTGAGAAAAGATTATGGTCTAATTTTGTACAGCTACATGGCAAATGGAAGTCTTCATGATGTTTTGCACGAAAAGACACCACCAGCAACCCTAGAGTGGAGTGTCCGGAATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTCCATTATGACTGTGATCCTCCCATAGTGCACCGAGACATCAAGCCAAGTAATATACTTCTAGACTCTGATATGGAGCCTCACATTGCTGACTTTGGTATTGCCAAACTTCTGGATCAGTCTTGTGCTTCAAATCCTTCCATTTCTGTGCCGGGTACAATTGGTTATATTGCACCAGAGAATGCTTACACAACAGCAAATAGTAGGGAGTCTGATGTATACAGTTACGGGGTAGTTTTGCTTGAGCTGATAACCAGAAAGAAGGTAGCAGATCCTTCCTTCATGGAGGGTGCTGTTATAGTGGATTGGGTTAGGTCTGTGTGGAGGGAAACAGGAGAAATTAATCAAATTGTTGATTCAAGCCTTGCAGAGGAATTTCTAGATACCCATATAATGGAAAATGTTACCAGAGTGCTTATGGTGGCTTTAAGATGTACTGAGAAGGAATCCTCACAAGAGACCGACAATGAGAGATGTTACCAAGCAATTATCATATGCTAA 3018 0.4168 MSMSMSMSMSCIVFLSCMFYGVSALTSDGVTLLSLLRHWTSVPPSINTTWLASDTTPCSSWVGVQCDHAHHVVNLTLPDYGISGQLGPEIGNLSRLQYLELAGNNLIGQIPDAFKNLHNLKLLSLRNNQLSGEIPHSLTQIPQVNLVDLSNNSLSGSIPTSIGNMTELLQLYLQSNHLSGTIPSSIGNCTKLQELFLDQNQLEGILPQSLNNLNNLASFDVSRNRLEGTIPLGSGSCKNLQFLDLSFNDFSGGLPSSLGNCTGLSEFAAVNCNLDGNIPPSFGLLTKLSILYLPENNLSGKIPPEIGNCMSLTGLHLYSNQLEGNIPSELGKLRKLVDLELFSNQLTGEIPLSIWKIKSLEHLLVYNNSLSGELPLEMTELKHLKNISLFNNQFSGVIPRSLGINSSLVQLDFTNNKFTGNIPPNLCFGKKLIILTMGFNQLQGPIPSELGNIVKLRTLNLAHNNLEGPLPSQLSKCTKMDRFDVGFNFLNGSLPSSLQSWTGLTTLILSENHFSGGLPAFLSEFKMLSELQLGGNMFGGRIPRSVGALENLMYGLNLSSNGLIGDIPVEIGNLKILQRLDLSENNLTGSIEVLGELLSLVELNISYNSFHGRVPKMLMKLLNSPLSSFLGNPGLCIRCSASDGLACTERSSIKPCDDKSTKQKGLSKVEIVMIALGSSIFVVLLLLLGLVYIFDFGRKANQEVHISAEGGSSSLLNKVMEATANLNDRYIIGRGAHGVVYKALIGPDKAFAAKRIGFAASKGKNLSMAREIETLGKIRHRNLVKLEDFWLRKDYGLILYSYMANGSLHDVLHEKTPPATLEWSVRNKIAVGIAHGLAYLHYDCDPPIVHRDIKPSNILLDSDMEPHIADFGIAKLLDQSCASNPSISVPGTIGYIAPENAYTTANSRESDVYSYGVVLLELITRKKVADPSFMEGAVIVDWVRSVWRETGEINQIVDSSLAEEFLDTHIMENVTRVLMVALRCTEKESSQETDNERCYQAIIIC 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00589 1005 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Pumo4g00589 1005 Pfam Leucine rich repeat 168 226 IPR001611 GO:0005515
Pumo4g00589 1005 SUPERFAMILY Protein kinase-like (PK-like) 715 956 IPR011009 -
Pumo4g00589 1005 SMART LRR_typ_2 165 189 IPR003591 -
Pumo4g00589 1005 SMART LRR_typ_2 117 141 IPR003591 -
Pumo4g00589 1005 SMART LRR_typ_2 285 309 IPR003591 -
Pumo4g00589 1005 SMART LRR_typ_2 213 237 IPR003591 -
Pumo4g00589 1005 SMART LRR_typ_2 574 597 IPR003591 -
Pumo4g00589 1005 SMART LRR_typ_2 453 477 IPR003591 -
Pumo4g00589 1005 SMART LRR_typ_2 190 212 IPR003591 -
Pumo4g00589 1005 SMART LRR_typ_2 93 116 IPR003591 -
Pumo4g00589 1005 ProSiteProfiles Leucine-rich repeat profile. 576 598 IPR001611 GO:0005515
Pumo4g00589 1005 FunFam Leucine-rich repeat family protein 237 472 - -
Pumo4g00589 1005 Gene3D Transferase(Phosphotransferase) domain 1 803 1002 - -
Pumo4g00589 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 803 1003 - -
Pumo4g00589 1005 ProSiteProfiles Protein kinase domain profile. 726 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00589 1005 Gene3D Ribonuclease Inhibitor 286 433 IPR032675 -
Pumo4g00589 1005 Gene3D Ribonuclease Inhibitor 434 642 IPR032675 -
Pumo4g00589 1005 FunFam Leucine-rich receptor-like protein kinase family protein 140 232 - -
Pumo4g00589 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 519 644 - -
Pumo4g00589 1005 FunFam Leucine-rich repeat receptor-like kinase 29 139 - -
Pumo4g00589 1005 ProSitePatterns Protein kinases ATP-binding region signature. 732 754 IPR017441 GO:0005524
Pumo4g00589 1005 Pfam Leucine Rich Repeat 455 477 IPR001611 GO:0005515
Pumo4g00589 1005 Pfam Leucine Rich Repeat 239 261 IPR001611 GO:0005515
Pumo4g00589 1005 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 693 802 - -
Pumo4g00589 1005 Gene3D Ribonuclease Inhibitor 183 281 IPR032675 -
Pumo4g00589 1005 Gene3D Ribonuclease Inhibitor 27 182 IPR032675 -
Pumo4g00589 1005 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 305 990 - -
Pumo4g00589 1005 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Pumo4g00589 1005 SUPERFAMILY RNI-like 302 620 - -
Pumo4g00589 1005 Gene3D Phosphorylase Kinase; domain 1 695 802 - -
Pumo4g00589 1005 SUPERFAMILY L domain-like 47 375 - -
Pumo4g00589 1005 Pfam Protein kinase domain 731 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00589 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 848 860 IPR008271 GO:0004672|GO:0006468
Pumo4g00589 1005 SMART serkin_6 726 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00589 Pumo-Chr4 7735441 7739952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00589 16 988 Receptor kinase-like Gene Family AT1G73080 47.266 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo4g00589 Pkinase 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00589 - - gmx:100778035 1268.45