Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00581 ATGGCTATTCCATCTCCTAAACTTTTCCTCCTTCTCTTAACACTCTTCTTCTCACATACTCTAGCTACCAAATCCTCCAATGCTTCCACAACATTGCATGCAAACCTCTCTTCCTTGAACAGAACCAACCAATTTCCTGAAGTTAGCTTCAATTCATCTAAGCTTTCCATCTCAATAAACATAAATCCAAACATCATTAACAACCTTCTTCAGTCCCTCCAAGCAGCAATATCTGAAGCCACAAAACTATCTGATCTATTAAACAGTGCTGGACACTCAAGCATCATAGAGAACAAAATAGGAGCAGTCCAAGACTGTAGAGAACTTCAACAATCCACCTTAGCTTCCTTAAAACGTTCACTATCAGGAATCCGTTCCCAAGACTCCAGAAAGCTAGTTGATGCAAGAATCTACCTCAGTGCAGCCCTCACCAACAAGGAAACGTGTCTAGAGAGCTTAGATTCTGCTTCGGGTACCCTTAAGCCAGTTCTAGTGGATTCTGTGATCAACTCTTACAAAGATGTCAGTGACTCTCTCTCAATGCTCCCTAAGCCTGACATAAAGGCTTCCAAAGGACACAAGAACCGGCGTTTGTTGTGGTTGTCGAGGAAAAACCGTCGCCTCTTGCAAAGCGATGATGATGGAGTGCTTGTTGTGGCTGCAGATGGAACGGGGAACTTTAGCACCATCACTGAGGCTATCAACTTTGCTCCAAATAACAGCCTTGGTAGGACAGTAATCTATGTCAAAGAAGGGACCTACGAGGAAAATGTTGAAGTTCCAAGTTATAAGACCAATATTGTTCTGCTTGGCGATGGAAAGGATGTCACAGTTATTACTGGCAACAGAAGTGTCATTGACGGCTGGACCACTTTCAGATCTGCAACTCTAGCGATCTCTGGTGAGGGCTTTTTGGCACGTGATATAGCTTTTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTGGCCTTGAGAGTGAATGCAGACTTCACTGCTTTCTACAGGTGTGCAATGTATGGATACCAAGACACTCTTTATGTTCACTCCTTTAGACAATTCTACAGGGAGTGTGACATTTTTGGGACCGTAGATTACATATTTGGGAATGCAGCAGTGGTTTTACAAGCATCCAACATTATCTCCAGGATGCCTATGCCCGGTCAATTCACTGTCATCACTGCACAGTCCAGAGATTCCCCTGATGAGGACACTGGCATCTCAATCCAAAACTGCTCAATTCTAGCTACCACAGATTTGTACTCCAGTAGTGTCAAGAGCTACCTTGGGAGGCCATGGAGGGTATATTCTCGTACTGTGTACCTTGAGTCCTACATTGATCAATTTATTGATCCAACGGGGTGGAAAGAGTGGTCTGGTGATCAAGGCTTGGACACTTTGTATTATGGAGAGTATGCCAATTATGGGCCTGGTTCAGGGACTGATAGCAGAGTCGATTGGGCTGGGTACCATTTAATGGATTACGACAGTGCCTACAACTTCACAGTTTCGGAGTTTATTATTGGTGATGCTTGGCTTGGGTCTACTTCCTTCCCTTATGATGATGGGATTTAA 1575 0.4419 MAIPSPKLFLLLLTLFFSHTLATKSSNASTTLHANLSSLNRTNQFPEVSFNSSKLSISININPNIINNLLQSLQAAISEATKLSDLLNSAGHSSIIENKIGAVQDCRELQQSTLASLKRSLSGIRSQDSRKLVDARIYLSAALTNKETCLESLDSASGTLKPVLVDSVINSYKDVSDSLSMLPKPDIKASKGHKNRRLLWLSRKNRRLLQSDDDGVLVVAADGTGNFSTITEAINFAPNNSLGRTVIYVKEGTYEENVEVPSYKTNIVLLGDGKDVTVITGNRSVIDGWTTFRSATLAISGEGFLARDIAFENKAGPEKHQAVALRVNADFTAFYRCAMYGYQDTLYVHSFRQFYRECDIFGTVDYIFGNAAVVLQASNIISRMPMPGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSSSVKSYLGRPWRVYSRTVYLESYIDQFIDPTGWKEWSGDQGLDTLYYGEYANYGPGSGTDSRVDWAGYHLMDYDSAYNFTVSEFIIGDAWLGSTSFPYDDGI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00581 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 182 IPR035513 -
Pumo4g00581 524 PANTHER PECTINESTERASE 63 514 - -
Pumo4g00581 524 Pfam Plant invertase/pectin methylesterase inhibitor 72 170 IPR006501 GO:0004857
Pumo4g00581 524 SMART PMEI_2 34 181 IPR006501 GO:0004857
Pumo4g00581 524 Gene3D - 214 524 IPR012334 -
Pumo4g00581 524 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Pumo4g00581 524 FunFam Pectinesterase 211 524 - -
Pumo4g00581 524 Pfam Pectinesterase 217 510 IPR000070 GO:0030599|GO:0042545
Pumo4g00581 524 FunFam Pectinesterase 32 184 - -
Pumo4g00581 524 CDD PMEI-like_3 44 186 - -
Pumo4g00581 524 SUPERFAMILY Pectin lyase-like 215 521 IPR011050 -
Pumo4g00581 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 184 IPR035513 -
Pumo4g00581 524 NCBIfam pectinesterase inhibitor domain 10 183 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00581 Pumo-Chr4 7645493 7647943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00581 37 524 Carbohydrate Esterase AT2G26440 65.294 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00581 - K01051 gmx:102666380 897.116