Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00580 ATGAAAAACAGAGAAGAGTCCATGTCAATGCAACAAACTGATTCGGTGGAAGCTGTAATAGTCACTAGTCACAGTGGGTGGGTTGTCAAGGACAGGATACGAATCCCAGTTGGATTTGGTTCTGCACTTATGGCTGTTCCTTTAGCAAAGCAGTCACGGAGATATTCCTCCCTCGGCCTCCCATTCACGTTATCGCTGTTCTTCTTTATTATCGCACTCTGCACCCCATTGGCTGCTGCTTCTCACACCGATTTCGTGGATTCAGCCTGCCTCAAAGTTTCCCCTACCCAATTCGCTGGTTCAGTCACCCAAGTCATTACTGCCATACGACAAGTCGCTTCCATTCTCTCACGCTTCAGCCCTCCCTTCTCCAACTTCCGCCTCGCCACCGCCGTCGCCGACTGCCTCGACTTGTTCGACCTATCCTCCGACATTCTCTCCTGGTCCCTCTCCGCCACTCAGAACCCCAAAGGGAAACATAACAGCACGGGGGACCTGAGCTCCGATTTGAGGACATGGCTAAGTGCGGTACTTGCGCATCCAGAGACGTGCATGGAGGGATTCGAAGGGACAAATAGCATTGTGAAGGGTTTGGTCTCAGCTGGCATCGGTCAAGTGGTGTCGTTGGTGGAGCAGCTTCTTGCGCAGGTGCTGCTGCCCGCACAGGATCAATTGGATGACACCAGCAAGGGGCAATTTCCTTCTTGGGTTAAGCCCAACGATAGGAAGCTGCTGCAATCAATGGGAATCACTCCTAATGCTGTTGTAGCTTTAGATGGGAGTGGGAACTACGCTAAGATCATGGATGCGGTGCTTGCAGCACCGGATTATAGCATGAAGCGGTTTGTGATTTACATAAAGAAGGGTGTTTATGTTGAGAACGTGGAGATCAAGAAGAAGAAGTGGAATATTATGATGGTTGGAGATGGGATGGATGCCACCGTTATTTCCGGTAACCGGAGTGTCGTCGACGGTTGGACCACCTTCCGGTCAGCTACATTCGCTGTGAGTGGCAGAGGGTTCATAGCAAGAGAAATTTCCTTTCAGAACACGGCAGGGCCCGAGAAGCACCAAGCAGTGGCACTGAGATCAGACTCTGACCTCTCCGTGTTCTACCGATGTGGGATCTTCGGTTACCAAGATAGCCTCTACACCCACACCATGCGCCAATTCTTCAGAGAATGCAGAATCAGTGGCACAGTTGATTTCATCTTTGGTGACGCCACTGCCATGTTCCAAAACAGTGCAATACGAGTCAAGAAAGGCATGCCAAATCAAAAGAACACAATCACAGCTCATGGCAGAAAAGACCCAAATGAACCAACCGGTTTCTCATTCCAATTCTGCAACATAACTGCAGATTCTGACCTTCTACCCTCAGTTAGCACCACCGAAACGTACCTAGGCAGACCCTGGAAGACTTATTCACGAACGGTTTTCATGCAATCGTACATGAGCGAGGTGATAAGGCCAGAAGGGTGGTTGGAGTGGAATGGAAACTTTGCTTTGGACACATTGTACTATGGTGAGTACATGAACACTGGGCCAGGTGCTGGAATAGCTAACCGTGTGAAATGGCCAGGGTACCATGCATTGAATGATTCAAGCCAGGCTAGTAACTTCACAGTGGCTCAATTTATTGAGGGGAATCTATGGTTGCCTTCCACGGGAGTAACCTACACTGCGGGACTGACAGTTTAA 1701 0.4974 MKNREESMSMQQTDSVEAVIVTSHSGWVVKDRIRIPVGFGSALMAVPLAKQSRRYSSLGLPFTLSLFFFIIALCTPLAAASHTDFVDSACLKVSPTQFAGSVTQVITAIRQVASILSRFSPPFSNFRLATAVADCLDLFDLSSDILSWSLSATQNPKGKHNSTGDLSSDLRTWLSAVLAHPETCMEGFEGTNSIVKGLVSAGIGQVVSLVEQLLAQVLLPAQDQLDDTSKGQFPSWVKPNDRKLLQSMGITPNAVVALDGSGNYAKIMDAVLAAPDYSMKRFVIYIKKGVYVENVEIKKKKWNIMMVGDGMDATVISGNRSVVDGWTTFRSATFAVSGRGFIAREISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFFRECRISGTVDFIFGDATAMFQNSAIRVKKGMPNQKNTITAHGRKDPNEPTGFSFQFCNITADSDLLPSVSTTETYLGRPWKTYSRTVFMQSYMSEVIRPEGWLEWNGNFALDTLYYGEYMNTGPGAGIANRVKWPGYHALNDSSQASNFTVAQFIEGNLWLPSTGVTYTAGLTV 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00580 566 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Pumo4g00580 566 Pfam Pectinesterase 253 550 IPR000070 GO:0030599|GO:0042545
Pumo4g00580 566 SUPERFAMILY Pectin lyase-like 250 563 IPR011050 -
Pumo4g00580 566 PANTHER PECTINESTERASE 87 554 - -
Pumo4g00580 566 FunFam Pectinesterase 247 564 - -
Pumo4g00580 566 Pfam Plant invertase/pectin methylesterase inhibitor 105 200 IPR006501 GO:0004857
Pumo4g00580 566 ProSitePatterns Pectinesterase signature 1. 278 297 IPR018040 -
Pumo4g00580 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 83 219 IPR035513 -
Pumo4g00580 566 CDD PMEI-like_4 64 217 - -
Pumo4g00580 566 Gene3D - 247 564 IPR012334 -
Pumo4g00580 566 SMART PMEI_2 81 216 IPR006501 GO:0004857
Pumo4g00580 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 100 211 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00580 Pumo-Chr4 7636476 7641382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00580 66 564 Carbohydrate Esterase AT3G43270 64.258 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00580 K01051 - gmx:100814987 872.078