Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00575 ATGGGGTTCTACGCTGAAGACCCTCTCTCTGGCTTGACAATAGGCCAGGCCATATACGAGGTAGCTCTCATCATTGCAGTTCTGAGATGGGTCTTGTGCTTGGTCTTCAGAATGATCAACGACAGAAGAACACGGTCTGACGAGATCCCACCACCAGAACCATGTTCTCAGATGACTAGGGACAACATTCTTGTGCTGACCACGTTCGGGGAGATTAAGGAGAGGCTGCCACAGACGGAGGACACGTGTGCGGTGTGCTTGAGCCAGCTGAGCGCGGAGGACGAGGTTAGGGAGCTCATGAACTGTTACCACGTGTTCCACAGAGAGTGCATAGACAGATGGTTGGAGCATGAGCATGAGAATCACAGCCCCACGTGTCCTCTCTGCAGGGCTCCTTTGCTGAGTTCTTGCTGCCACCACAGCTCCACTACATGTGTGCCTCCTCCTCAGCCTAGTTGGGCTGTGGAGAGACTCCTCTATCTCTTTGGGGATGATCTCTTGCCTTGTTAG 510 0.5333 MGFYAEDPLSGLTIGQAIYEVALIIAVLRWVLCLVFRMINDRRTRSDEIPPPEPCSQMTRDNILVLTTFGEIKERLPQTEDTCAVCLSQLSAEDEVRELMNCYHVFHRECIDRWLEHEHENHSPTCPLCRAPLLSSCCHHSSTTCVPPPQPSWAVERLLYLFGDDLLPC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00575 169 SMART ring_2 83 129 IPR001841 -
Pumo4g00575 169 ProSiteProfiles Zinc finger RING-type profile. 83 130 IPR001841 -
Pumo4g00575 169 Pfam Ring finger domain 81 130 IPR001841 -
Pumo4g00575 169 SUPERFAMILY RING/U-box 77 136 - -
Pumo4g00575 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 137 IPR013083 -
Pumo4g00575 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00575 Pumo-Chr4 7558883 7560051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00575 1 166 C3H Transcription Factor Family AT5G20885 47.514 1.23e-43 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00575 K16281 - gmx:100306203 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00575 4 7558883 7560051 Pumo4g00575 4 7558883 7560051 ECH