Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00571 ATGGTGCAGTTGGAGCAGTGTGGGACCAGTGCAGCGAATGGAATCAATGAGAGCCTCTTCCTCTTGCAAGTGTTAAAAGTACAATCAGCAACAAACATTGCAAATCCACACCCCCCACTTGCTCCTAAGCCATACAATACAACACAACAAGTTGCTTTTTTATCAACCATGGCTGGTGTGAACCCCGAGGCAGGAGGATGGAAGGCTTATCCTTCTGGTCTTGATAGTGGTGATGGAAGGAGTGATAACATGGAGGTCCATAATTCCTTGAATGATGATGGGTCGGTGATGCATTTCTCTGCTACAAGGCCAGTGGCAGTGCCAATATCTGGACAGAATGCAGTGAATCCTAGTCCAACTCAGTTTACCATCCTCTATAAGGGGAATATGTGTATCTATGATGGAATTCCTGCAGCTAAGGTGCGTGAAATAATGTTGATTGCTTCTACCTCTGCTAAGTCTGCTGAAATGAAGAGTGGGATCACCTTGTCTTCACTCATTGCCACAAGCCATTCTTCTTCACAGGGAAACTCTACTAATATGGCTTCAATCCAATCAGTCTGTTTTCCTGCAAAGAAGAGTTCCATTCGAAGGCTGCAAGATGAATTTCCACTAGCACGCAGGCAATCACTCCAAAGGTTTCTTGAGAAGCGAAGAAATAGGTTGGCTAACAAAGCTCCTTATTCCTTAACCAAAAAAGTGGCTCACAACATAGACAACAACTTCTCTCCTGACGACACGCCAGATTTTGGTTCCTTGAACTTTCAGAAGAGGGATTTCAACCCTGTGTTGCTGCTTTAA 801 0.4444 MVQLEQCGTSAANGINESLFLLQVLKVQSATNIANPHPPLAPKPYNTTQQVAFLSTMAGVNPEAGGWKAYPSGLDSGDGRSDNMEVHNSLNDDGSVMHFSATRPVAVPISGQNAVNPSPTQFTILYKGNMCIYDGIPAAKVREIMLIASTSAKSAEMKSGITLSSLIATSHSSSQGNSTNMASIQSVCFPAKKSSIRRLQDEFPLARRQSLQRFLEKRRNRLANKAPYSLTKKVAHNIDNNFSPDDTPDFGSLNFQKRDFNPVLLL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00571 266 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 87 230 IPR040390 -
Pumo4g00571 266 SMART tify_2 115 150 IPR010399 -
Pumo4g00571 266 Pfam tify domain 117 149 IPR010399 -
Pumo4g00571 266 Pfam Jas motif 204 229 IPR018467 -
Pumo4g00571 266 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00571 Pumo-Chr4 7529948 7533646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00571 119 228 Tify Gene Family AT5G20900 43.750 4.58e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo4g00571 tify 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00571 K13464 - gmx:100306282 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00571 4 7529948 7533646 Pumo2g01834 2 34362059 34365752 PCT