Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00558 ATGGGAACATTAGAGCAAATTGATGCTCCTCAAACCCAGTCATCATCATCTTCATCCTCTTCCATTGATAGCAACAACCACCCTTCTAGGACACCACCACCACCCTCTTCCCCTTCATCAAGTGTCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGCCTTAGCATCTCTCCTTCTTCCCAATCTGAATCACCCTTCAATTCAACATCAAGGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCCATATTGAGGAGCACCCTTGCGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCTTTGTTTGTCAAAGTCTATATGGAAGGCATCCCCATCGGAAGAAAATTGAATCTGATGGCACATTATAGCTATGATGGACTTGTGAAAACTCTTGGCCATATGTTTAGGACCACCATTCTCTGTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAGATGTTCTTGAACAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAG 582 0.4519 MGTLEQIDAPQTQSSSSSSSSIDSNNHPSRTPPPPSSPSSSVCRNRTDLSTDLRLGLSISPSSQSESPFNSTSREESFDWPPIKSILRSTLAGKQSHLSQRPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTTILCPNSQPLNSGNFHVLTYEDQEGDWMMVGDVPWEMFLNSVKRLKITRADRC 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00558 193 SUPERFAMILY CAD & PB1 domains 97 187 - -
Pumo4g00558 193 Gene3D - 97 193 - -
Pumo4g00558 193 MobiDBLite consensus disorder prediction 1 27 - -
Pumo4g00558 193 MobiDBLite consensus disorder prediction 1 77 - -
Pumo4g00558 193 MobiDBLite consensus disorder prediction 40 77 - -
Pumo4g00558 193 ProSiteProfiles PB1 domain profile. 103 192 IPR000270 GO:0005515
Pumo4g00558 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 49 191 IPR003311 GO:0005634|GO:0006355
Pumo4g00558 193 Pfam AUX/IAA family 69 189 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00558 Pumo-Chr4 7367036 7368224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00558 107 187 B3 DNA Binding Superfamily AT4G23980 38.272 2.40e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo4g00558 AUX_IAA 3.6e-33 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00558 4 7367036 7368224 Pumo4g00558 4 7367036 7368224 ECH