Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00554 ATGGAGGGCAAAGTTGCATTGAAAAAATTGCTGCAAGTTCAGAAAAAGGCATATGTTAATAATACAGATGCACTCAACTGGACTGAGGAACCGTCCATTAGAAATACAAATACTCTAGGATCTACTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAAAATCATGAGCAACAGCCCCTGAACCAACTGGGCTTGCTGCAAATTGAGCTAGAGGAGGTGAAGAAGGAGAATCAGAATTTAAGGTCTATGCTAAATGAGATCACTGAACACTACGCTGCTCTTCAGAATCAGTTATTGTTGGCGATGCAGCAGAAGAAACTATCTTCATCACCTCGACATAATGAGGACATGCAGAAGGACAGCAAGCAAAATGACATGGAGAAACCAGCGTTACCATCCAGCAGGCAGTTCTTAAATACTGGTAAAATCAATAATCAAGTAACATCACAAGAAGCAAAAATCATAGAAGAGCAAGCATTTGAGGCTTCTTGCAAGAAAGCTAGAGTGTCCGTAAGAGCACGATCAGAATCATCTGCGATGGGTGATGGGTGTCAATGGAGAAAATATGGACAAAAGATATCAAAGGGTAACCCTTGTCCTCGGGCCTACTATCGTTGCAACATGGGAACAGCATGTCCAGTTCGCAAGCAGGTTCAAAGGTGTGCTGAGGATGAGAGTGTTGTCATCACTACCTATGAGGGGAATCATAATCATTCACTTCCACCAGCAGCCAGGTCCATTGCGTGCATCAACATCAGCAGCACTGAACATGTTCCTTTCTGGCTCGACCACTAG 801 0.437 MEGKVALKKLLQVQKKAYVNNTDALNWTEEPSIRNTNTLGSTLLSLSLNNLEPPQNHEQQPLNQLGLLQIELEEVKKENQNLRSMLNEITEHYAALQNQLLLAMQQKKLSSSPRHNEDMQKDSKQNDMEKPALPSSRQFLNTGKINNQVTSQEAKIIEEQAFEASCKKARVSVRARSESSAMGDGCQWRKYGQKISKGNPCPRAYYRCNMGTACPVRKQVQRCAEDESVVITTYEGNHNHSLPPAARSIACINISSTEHVPFWLDH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00554 266 MobiDBLite consensus disorder prediction 107 144 - -
Pumo4g00554 266 Pfam WRKY DNA -binding domain 184 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00554 266 Gene3D WRKY domain 166 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g00554 266 SUPERFAMILY WRKY DNA-binding domain 175 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g00554 266 SMART WRKY_cls 182 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00554 266 Coils Coil 65 106 - -
Pumo4g00554 266 ProSiteProfiles WRKY domain profile. 177 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00554 266 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 55 250 IPR044810 GO:0003700
Pumo4g00554 266 MobiDBLite consensus disorder prediction 129 144 - -
Pumo4g00554 266 FunFam probable WRKY transcription factor 31 167 244 - -
Pumo4g00554 266 MobiDBLite consensus disorder prediction 111 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00554 Pumo-Chr4 7318138 7321419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00554 154 250 WRKY Transcription Factor Family AT4G04450 72.165 4.33e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g00554 WRKY 7.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00554 - - gmx:100797109 397.127