Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00550 ATGGTGCGTCGATTACCGTTGTTGAGCGAGGCTTTGCGGATTGTTATAAGGAGTTGGTTCTTCTACAGAGTTCGTGGGGTTTGTGGGCAACCTTGGTTGTTTTCGTCATTCTTCAAAGACCAAGTTTCGGGAGAATATTGTATTGCTATTTGGTGCGACCCACTATTCCACAAAAACCATGTGCTTTGCAAAATTAATACCCTCCAAGTGTTCGACAAAATATCCACCCCACATGGCGGCCCCCGACCCACTCCCACAACTCCGGTGAGAGGCCGCAGACGCCGCCACCGTCGCAGGAGGCACCGAAAATGCACCTCTAGACAGGTCAGGGACCCTGGTCAAGAACCGAAGAAAAGTTTTCACGTTTACGAAAGAAAACAGAGCGAGCGGGTTTTAAATTTTGAGAGGCATTGCATTGAGTTGCAAGATAGAGACAGAGAATCCATGGAAGTGGAGGACGACTGGGATTTGAGCGCAGAGGACCTCGATTCTCTCGAAAGAGACGCTTTTCAGAAAATTGCTCAACTACGCAACCCTACTCCTCCTCCTCCTTCTTCTTCTCCGCATCAACGCCACCATTCTGCAACTACAACCAACCACCCCCCACCAAAACCCCTTCCCGATTCGCGTCCCCAAACTGTTGGTAACTTGTCTCAAGGAGCAAGAGCATTGCCCACGTCATTGAAATCAGGGGGGACAAATAACGACAAGCAGTCAAAAGAGCTGCCAAAGTTTTCAGTCAAATTTTTTCTTCATTCCAGTGGAAATGTTGCAGCAAAGTTTCAATATGACCAGGTAGTAATTTCTGCTTTTCGAAGAATCCCTAGATCTTCTTGGAATGCAAAGGAACGGTTATGGATATTCCCGCAATCTTCGTTGTCGGAAGCAGAAAAGGTTCTTGGAGAAATACCTGGTTATAATGTTCAGGTGGAAAACTTAGATCCCTTGGTGCAACGTGCCATTGCTGCGGCATCTGCAGTTCCAGATCTTCAAGATCGATACCACAAGATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACTTTGCAGGCCATTGCTGTAGCTTCATGCATTCAGGACTCGTGGCCTGTTCTCATAATTGCACCATCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAGCATTCGTCTGGATGGACTATTCAACATTATCTCATACGATTTGGTGCCAAAGCTACAGAATATGCTTATGACATGTGACTTTAAGGTTGTGATTGCTGATGAATCGCATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCCTTGTATCCTGATGTATATAGGAATGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGATTTTTTGGAGTTTACCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATCAAGGCAACAGTGATGATTCGCAGGCTTAAAAATGACGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTAGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCGAGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTGCTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCAATACACGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCTGCTGCATCCAGGCAACAATTGGTTACAGAGTTTCAGGAAAAAGATTCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCATTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTAGCAAATGACACGGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGATGGCCATGAGAACGCCTTGGAGGTCTCAGCTAGTCTGCCGGTGAATAGCCCTTCAAAGCAGAAAACTATGGACCAGTTTGTTAGAAGATCTGATAACATGGATAGTTTGGTGAATAGTCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGTGATAACATGGATAGGTTGGACAATGAGCCCAACCCCAAACGTCCCCGAAACTGA 2583 0.4355 MVRRLPLLSEALRIVIRSWFFYRVRGVCGQPWLFSSFFKDQVSGEYCIAIWCDPLFHKNHVLCKINTLQVFDKISTPHGGPRPTPTTPVRGRRRRHRRRRHRKCTSRQVRDPGQEPKKSFHVYERKQSERVLNFERHCIELQDRDRESMEVEDDWDLSAEDLDSLERDAFQKIAQLRNPTPPPPSSSPHQRHHSATTTNHPPPKPLPDSRPQTVGNLSQGARALPTSLKSGGTNNDKQSKELPKFSVKFFLHSSGNVAAKFQYDQVVISAFRRIPRSSWNAKERLWIFPQSSLSEAEKVLGEIPGYNVQVENLDPLVQRAIAAASAVPDLQDRYHKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQDSWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNRGGFNIVSSSAKSSIRLDGLFNIISYDLVPKLQNMLMTCDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGFFGVYQGASNHEELHNLIKATVMIRRLKNDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIKAAKSQEEAESLKFAQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGGTPAASRQQLVTEFQEKDSIKAAVLSIKAGGIGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENALEVSASLPVNSPSKQKTMDQFVRRSDNMDSLVNSPSKQKTLDQFVRRCDNMDRLDNEPNPKRPRN 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00550 860 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 645 797 IPR001650 -
Pumo4g00550 860 FunFam Chromatin remodeling factor18 603 828 - -
Pumo4g00550 860 Gene3D - 607 845 IPR027417 -
Pumo4g00550 860 MobiDBLite consensus disorder prediction 88 106 - -
Pumo4g00550 860 Pfam SNF2-related domain 363 623 IPR000330 GO:0005524|GO:0140658
Pumo4g00550 860 SMART helicmild6 671 754 IPR001650 -
Pumo4g00550 860 Gene3D - 317 592 IPR038718 -
Pumo4g00550 860 ProSiteProfiles HARP domain profile. 238 315 IPR010003 -
Pumo4g00550 860 Coils Coil 597 617 - -
Pumo4g00550 860 MobiDBLite consensus disorder prediction 74 120 - -
Pumo4g00550 860 MobiDBLite consensus disorder prediction 175 217 - -
Pumo4g00550 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 568 IPR027417 -
Pumo4g00550 860 SMART ultradead3 341 534 IPR014001 -
Pumo4g00550 860 FunFam Chromatin remodeling factor18 318 592 - -
Pumo4g00550 860 Pfam Helicase conserved C-terminal domain 655 754 IPR001650 -
Pumo4g00550 860 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 152 847 - -
Pumo4g00550 860 CDD DEXHc_HARP_SMARCAL1 345 568 - -
Pumo4g00550 860 CDD SF2_C_SNF 641 765 - -
Pumo4g00550 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 796 IPR027417 -
Pumo4g00550 860 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 354 526 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00550 Pumo-Chr4 7283359 7292960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00550 651 795 RAD5 or RAD16-like Gene Family AT1G11100 33.103 1.41e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo4g00550 SNF2_N 5.9e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00550 K14440 - gmx:100778246 1329.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00550 4 7283359 7292960 Pumo4g00550 4 7283359 7292960 ECH