Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00545 ATGGGACTTGACACGAGTGTTGGAGAGCATGGTACACAGCTCTCTGGGGGTCAAAAGCAAAGAATTGCCATAGCAAGGGCAATTCTGAAAGATCCAAAAATTCTACTCCTTGATGAAGCTACAAGTGCCCTTGATGCTGAGTCTGAGAGAGTGGTGCAAGAAACACTAGACAAAATTATGATAAACCGAACAACTGTCATTGTAGCACACCGCCTAAACACAATAAGGAATGCTGATACCATTGCCGTTATTCATCAAGGAAGAGTAGTAGAAAATGGTACACATGCTGAGCTCATTAACGATCCAGATGGAGCTTATAGCCAGCTCATTAGATTGCAAGAAATTAACAGGCAGTCAGATGGTACAAATGACTCAGGCAGACTAGAAAACTTCATAGATTCTGAACGACAATCAAGCCAACAGTTTCCTTTCCCTCAATCTTTATTCCAGGGATCATCCGGAATAGGAAACAGAAATCGTCACTCATTCGAAATATCAAATGCTATGCCTACTACACTTGATCTCTTGAAAACATCAGAAGGAGGACCTGAAGTTCTTCCTCCAGCAAAACTGTATGAGGAAGCAAGTCAAATAGCGAATGACGCGGTAGGGAATATCAGAACAATTGCTGCTTTTTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTTTAGGACCCATCCAGACAGGTATATGGCAAGGTTTAGTCAGTGGAACAAGTTTCGGGTTATCACTCTTCCTTGTGTTCTCAGTTAATGCATGCAGTTTTTATGCTGGAGCCCAACTTGTTGAGAATGGCAAAACATCAATCTCAGATGTTTTCCGTGTGTTTTTCACTCTCACAATGGCAGCTATAGCAATTTCACAATCTGGCTTCATGGCCCCCGGTGCGAGCAAAGCAAAAAGTTCTGTTGCTTCTATATTTGCTATTCTTGACCAGAAATCAAGAATAGATCCCACTGATGAGTCTGGAATGACATTGCAAGAAGTGAAGGGAGAGATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGCTCTTGTATGCAGAGATCTTTCCTTGACCATTCATGCAGGAGAGGGTTATGACACATTAGTGGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTACTACTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGACCGAGTGATGGTGGATAGAACCACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAGTAGCAGTGGTTCAAAATGGAGTCATCGCTGAGCAAGGAAAACATGACACTTTGCTTAACATGGGTGGTATCTATGCTTCATTAGTAGGCTTGCACACAAGTCTTGCTTCATCTTAG 1452 0.4311 MGLDTSVGEHGTQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQETLDKIMINRTTVIVAHRLNTIRNADTIAVIHQGRVVENGTHAELINDPDGAYSQLIRLQEINRQSDGTNDSGRLENFIDSERQSSQQFPFPQSLFQGSSGIGNRNRHSFEISNAMPTTLDLLKTSEGGPEVLPPAKLYEEASQIANDAVGNIRTIAAFCAEEKVMELYQKKCLGPIQTGIWQGLVSGTSFGLSLFLVFSVNACSFYAGAQLVENGKTSISDVFRVFFTLTMAAIAISQSGFMAPGASKAKSSVASIFAILDQKSRIDPTDESGMTLQEVKGEIEFHHVTFKYPTRPNALVCRDLSLTIHAGEGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVMVDRTTIVVAHRLSTIKDADSVAVVQNGVIAEQGKHDTLLNMGGIYASLVGLHTSLASS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00545 483 Pfam ABC transporter 4 42 IPR003439 GO:0005524
Pumo4g00545 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 476 IPR027417 -
Pumo4g00545 483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 206 476 IPR003439 GO:0005524
Pumo4g00545 483 Gene3D - 1 129 IPR027417 -
Pumo4g00545 483 Gene3D ABC transporter type 1, transmembrane domain 189 355 IPR036640 GO:0005524|GO:0016020
Pumo4g00545 483 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 189 302 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo4g00545 483 Pfam ABC transporter 363 407 IPR003439 GO:0005524
Pumo4g00545 483 Gene3D - 363 480 IPR027417 -
Pumo4g00545 483 SUPERFAMILY ABC transporter transmembrane region 191 321 IPR036640 GO:0005524|GO:0016020
Pumo4g00545 483 ProSitePatterns ABC transporters family signature. 379 393 IPR017871 GO:0005524|GO:0016887
Pumo4g00545 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 113 IPR027417 -
Pumo4g00545 483 PANTHER ABC TRANSPORTER B FAMILY 2 117 IPR039421 -
Pumo4g00545 483 Pfam ABC transporter transmembrane region 192 287 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo4g00545 483 FunFam ATP-binding cassette protein subfamily B, member 2, putative 231 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00545 Pumo-Chr4 7221903 7226903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00545 359 477 Calmodulin-binding Proteins AT2G36910 61.983 2.42e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00545 K05658 - nnu:104586067 342.428