Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00544 ATGGTTGGCGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAACAAAGAATATCTATAGCAAGAGCAATTCTGAAGGACCCGAGAATTCTGCTCCTTGATGAAGCTACAAGTGCTCTTGACGCAGAATCAGAGAGAGTGGTGCAAGAAACACTAGACAGAATTATGATAAACCGAACAACTATCATTGTAGCCCACCGCCTAAGCACAATAAGGAATGCGGATGTCATTGCAGTTATTCATCAAGGAAAAGTAATAGAAAAAGGCACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTTTAGCCAGCTCATTAGATTGCAAGAAATTAAAAGGGGGTCAGAACAACATGATGCAAATGACTCAGGCAGGCCAGAAAACATGGTAGATTCTGAACGACAATTGAGCCAACGGTTTTCTTTCCCTCAATCTTTAAGCCGGGGATCATCTGGAAGAGGAAACAGCCGTCAGCACTCATTCAAAATATCAAATGCCATGCCTACCTCAGTAGATCTCTTTGAAACATCAGAAGGAGGGCCTGAAAAACAATATGAGGAAGCAAGTCAAGTAGCGAATGATGCAGTAGGGAATATCAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTGTAGGACCAATTCAGACAGGTATAAAGCAAGGTTTAGTCAGCGGAACAGGTTTGGGGTTATCACTCTTCTTTCTGTTCTCTGTTTATGCATGCAGTTTTTACGCCGGGGCCCGACTTGTTGAGAAGGGCAAAACCTCAATCTCAGATGTTTTCCGTGTACTTTTTGTTCTCTCAATGGCAGCTATAGCAATGTCACAATCCGGCTTCATGACCCCAGCTGCAAGTAAAGCAAAAAGCTCTGCTGCTTCTGTATTTGCTATTCTTGATCAGAAATCAAGAATAGACTCCGGTGATGAGTCTGGAATGACATTGCAAGAAGTGAAGGGAGAGATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGACCTAATGTTCTTGTATTCAAAGATCTTTCCTTGACCATTCACGCAGGAGAGGGTTATGACACATTGGTGGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGACCGAGTGAGGGTGGACAGAACCACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTAAAAATGGAATTATTGCAGAGAAAGGAAAGCATGACACTTTGCTTAACAAAGGTGGTACATATGCTTCCTTAGTAGCACTGCACATTAGTGCTGCTTCATCATAG 1428 0.437 MVGEHGTQLSGGQKQRISIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTIIVAHRLSTIRNADVIAVIHQGKVIEKGTHAELTKDPDGAFSQLIRLQEIKRGSEQHDANDSGRPENMVDSERQLSQRFSFPQSLSRGSSGRGNSRQHSFKISNAMPTSVDLFETSEGGPEKQYEEASQVANDAVGNIRTVAAFCAEEKVMELYQKKCVGPIQTGIKQGLVSGTGLGLSLFFLFSVYACSFYAGARLVEKGKTSISDVFRVLFVLSMAAIAMSQSGFMTPAASKAKSSAASVFAILDQKSRIDSGDESGMTLQEVKGEIEFHHVTFKYPTRPNVLVFKDLSLTIHAGEGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDRTTIVVAHRLSTIKDADSIAVVKNGIIAEKGKHDTLLNKGGTYASLVALHISAASS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00544 475 SUPERFAMILY ABC transporter transmembrane region 183 309 IPR036640 GO:0005524|GO:0016020
Pumo4g00544 475 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 198 468 IPR003439 GO:0005524
Pumo4g00544 475 ProSitePatterns ABC transporters family signature. 371 385 IPR017871 GO:0005524|GO:0016887
Pumo4g00544 475 Pfam ABC transporter transmembrane region 182 275 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo4g00544 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 108 IPR027417 -
Pumo4g00544 475 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 182 294 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo4g00544 475 FunFam Uncharacterized protein 290 319 - -
Pumo4g00544 475 Pfam ABC transporter 3 37 IPR003439 GO:0005524
Pumo4g00544 475 MobiDBLite consensus disorder prediction 111 128 - -
Pumo4g00544 475 Gene3D - 319 358 IPR027417 -
Pumo4g00544 475 Gene3D - 359 469 IPR027417 -
Pumo4g00544 475 Gene3D - 1 109 IPR027417 -
Pumo4g00544 475 Gene3D ABC transporter type 1, transmembrane domain 181 318 IPR036640 GO:0005524|GO:0016020
Pumo4g00544 475 Pfam ABC transporter 359 399 IPR003439 GO:0005524
Pumo4g00544 475 MobiDBLite consensus disorder prediction 111 161 - -
Pumo4g00544 475 PANTHER ABC TRANSPORTER B FAMILY 358 468 IPR039421 -
Pumo4g00544 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 468 IPR027417 -
Pumo4g00544 475 MobiDBLite consensus disorder prediction 129 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00544 Pumo-Chr4 7190954 7194521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00544 351 472 Calmodulin-binding Proteins AT2G36910 59.677 2.05e-40 153