Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00538 ATGGTGACTATAAACCTTGGGAAGAAGAAGAGCGAGAGAGAAGGAATGCGACTTGGGAAATACGAGTTGGGTAGGACTCTTGGTGAAGGCAATTTTGGCAAAGTTAAGTTCGCTAGGAACACTGATTCTGGTCAAGCTTTTGCTGTTAAGATCATTGAGAAGAACAAGATCATCGATCTCAACATCACCAATCAGATAAAGAGGGAAATAGCCACCTTAAAGCTCCTCAGGCATCCCAATGTTGTCAGATTATATGAGGTCTTGGCTAGCAAAACAAAAATTTATATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTAACATAATTGCATCCAAAGGTAAACTTACTGAAGGTGAAGGTAGAAAGTTGTTTCAACAGTTGATTGATGGGGTGAGCTACTGTCACACTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTAGTGGATAACAAAGGGAACATAAAAATAACTGATTTTGGCCTTAGTGCTTTACCTCAGCATCTTAGGGCAGATGGATTGCTGCATACAACTTGTGGAAGTCCCAATTATGTTGCACCAGAGGTTGTTGCTAATAAGGGCTATGACGGTGCAACATCAGATACATGGTCATGTGGTGTTATATTATATGTAATCCTAACAGGATACCTACCTTTTGATGATAGAAATCTTGTAGTTCTCTATCAGAAGATTTTTAAAGGAGATGTTAAGATACCAAAATGGCTATCACCGGGTGCACGAAATATGATAAAGAGGATTCTTGATCCCAACCCGGAAACACGGATAACAATGGCTGGGATCAAAGAAGATCCATGGTTCAAGAAGGGCTATATTCCAGCAAATCCTGAGGATGAGGATGTATATGTTGACCATGAAGCCTTTTCCATCCATGAAGAGCCAGAAGAGCCAAATGAAGCAGAACTGAGGAATTCAGGGTCACCAACCCTTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTCTCTGAGAGAAAGATAAGATTTACATCAAATCTTTCAGTTAAAGATCTGATCGAGAGGATTGAAGACACTGTGACAGAAATGGAATTTAGAGTCCAGAAGAAAAATGGCAAATTGAAAGTGATACGAGAGAACAAGGTGCACAAAACTCTTGGCTGCCTCTCAGTGACAGTAGAGGTGTTTGAAATAAGCCCATCATTGTACGTAGTAGAATTAAGGAAGTCTTATGGAGATGGTTCGCTATATAAACAGGTATTTCTTTATACTCTCTCTTTCTCTATTCCCCTTCTAAAATCAGGGGTTGAGGATGTGATTGATGGCTATTATATATACTTTTTTCATACGGCGCAGTTATGCAAGAAATTATTGAATGATTTGGGTGTTCCCCCCAAGCAAGCGCTAGTGAGATCAGCAGCAAATTAG 1449 0.401 MVTINLGKKKSEREGMRLGKYELGRTLGEGNFGKVKFARNTDSGQAFAVKIIEKNKIIDLNITNQIKREIATLKLLRHPNVVRLYEVLASKTKIYMVLEYVNGGELFNIIASKGKLTEGEGRKLFQQLIDGVSYCHTKGVFHRDLKLENVLVDNKGNIKITDFGLSALPQHLRADGLLHTTCGSPNYVAPEVVANKGYDGATSDTWSCGVILYVILTGYLPFDDRNLVVLYQKIFKGDVKIPKWLSPGARNMIKRILDPNPETRITMAGIKEDPWFKKGYIPANPEDEDVYVDHEAFSIHEEPEEPNEAELRNSGSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNLSVKDLIERIEDTVTEMEFRVQKKNGKLKVIRENKVHKTLGCLSVTVEVFEISPSLYVVELRKSYGDGSLYKQVFLYTLSFSIPLLKSGVEDVIDGYYIYFFHTAQLCKKLLNDLGVPPKQALVRSAAN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00538 482 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Pumo4g00538 482 CDD CIPK_C 321 440 - -
Pumo4g00538 482 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Pumo4g00538 482 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Pumo4g00538 482 Gene3D Transferase(Phosphotransferase) domain 1 13 321 - -
Pumo4g00538 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Pumo4g00538 482 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 420 - -
Pumo4g00538 482 FunFam Non-specific serine/threonine protein kinase 317 435 - -
Pumo4g00538 482 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00538 482 SUPERFAMILY Protein kinase-like (PK-like) 18 289 IPR011009 -
Pumo4g00538 482 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00538 482 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00538 482 Gene3D Kinase associated domain 1, KA1 322 437 - -
Pumo4g00538 482 FunFam Non-specific serine/threonine protein kinase 14 315 - -
Pumo4g00538 482 Pfam NAF domain 317 376 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00538 Pumo-Chr4 7093336 7100347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00538 84 428 CBL-interacting serine-threonine protein kinases AT3G17510 71.552 2.31e-173 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pumo4g00538 Pkinase 2.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00538 K07198 - gmx:100777468 826.624