Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00531 ATGGCATCTGATCTAAATTCGGGGTTGTCCAGGGAGACATCTGTTTTTGGGTTGAAAGCATGGGAATTAATGGGGATAATAGTTGGGTTGTTCATTATAATCATTCTCGTGGTGATATCAATATGTCTTACTTCAAGAAAGAAATCTAGAAGAGTCACTGGCATGCTTCCCCTTAGCCGTATGTTATCAGTTTCAGATGAGATCAAGGAAATTAGAGTTGATCAAGTTTCAGCCAATAATCATCCTCAGAATGGAGCTTTTGTGAGTCTGTATGACAGGTTTAGTGACAGGGACTCTGAAAAGGTTTTGATCCCAACAAATAATGGGGAAAATAGCAGTCAATCAGGCTCATTTGTTCATATTAAGAAAGATGATGGCTCTCAATCAGGTGAAGAAAGTGGTGCTAAGTCTGTTTCTACTTACAGATCTTCTTCACATCCTATAACTGCACCGTCCCCCTTGTCTGGTCTGCCTGAATTCTCTCACCTTGGCTGGGGACACTGGTTTACGTTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCGAAAGACAATGTTATCGGTGAAGGTGGATATGGTGTTGTTTATCAGGGCCAATTAATCAATGGGAGTCCTGTGGCTGTTAAGAAGCTACTCAATAATCTAGGACAAGCTGAAAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGCCATGTGCGGCACAAGAATTTGGTTAGACTTTTAGGCTATTGCATTGAAGGCACTCACAGGTTGTTGGTTTATGAGTATGTTAACAATGGTAATTTAGAGCAATGGCTTCATGGAGCCATGCGGCAGTATGGTTTTCTTACTTGGGATGCTCGGATTAAAATTCTTCTTGGAACAGCTAAAGCGCTAGCTTACTTGCACGAGGCAATTGAGCCAAAAGTTGTACATCGAGATATTAAATCAAGCAATATTCTAATTGATGATGACTTCAATGCCAAAATATCTGACTTTGGGCTGGCAAAGTTATTGGGTGCTGGAAAAAGTCATATCACAACTCGAGTAATGGGTACTTTTGGATATGTGGCTCCAGAATATGCCAATTCTGGATTACTAAATGAGAAGAGTGATGTCTACAGCTTTGGGGTATTGCTCCTCGAAGCAATTACTGGAAGAGACCCAGTGGATTATAGCCGACCAGCAGCTGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTTGGGAATAGGCGCGCAGAAGAGGTGGTAGACCCTAACATTGAGACCAGGCCATCAACAAGTTCCCTTAAACGTGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAGAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCAGAGGAATATCCCATACCCCGAGAGGATCGAAGACGCCGAAAGAGCCAGGCAGGAAATATGGAGCTGGAGGCCCAGAAGGAGGCCTCTGACACAGAGAAGACTGATAATCCAGATTCCAAGTCCAATGGCAGAAGGAACCAAAGGAAGTAG 1512 0.4292 MASDLNSGLSRETSVFGLKAWELMGIIVGLFIIIILVVISICLTSRKKSRRVTGMLPLSRMLSVSDEIKEIRVDQVSANNHPQNGAFVSLYDRFSDRDSEKVLIPTNNGENSSQSGSFVHIKKDDGSQSGEESGAKSVSTYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSSLKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRKSQAGNMELEAQKEASDTEKTDNPDSKSNGRRNQRK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00531 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Pumo4g00531 503 MobiDBLite consensus disorder prediction 102 150 - -
Pumo4g00531 503 FunFam Putative receptor-like protein kinase 163 256 - -
Pumo4g00531 503 FunFam Putative receptor-like serine/threonine-protein kinase 257 468 - -
Pumo4g00531 503 Pfam Protein kinase domain 182 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00531 503 CDD STKc_IRAK 187 453 - -
Pumo4g00531 503 SMART serkin_6 181 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00531 503 MobiDBLite consensus disorder prediction 452 503 - -
Pumo4g00531 503 Gene3D Phosphorylase Kinase; domain 1 163 256 - -
Pumo4g00531 503 MobiDBLite consensus disorder prediction 131 150 - -
Pumo4g00531 503 Gene3D Transferase(Phosphotransferase) domain 1 257 469 - -
Pumo4g00531 503 ProSitePatterns Protein kinases ATP-binding region signature. 187 210 IPR017441 GO:0005524
Pumo4g00531 503 ProSiteProfiles Protein kinase domain profile. 181 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00531 503 PANTHER OS01G0323000 PROTEIN 4 483 - -
Pumo4g00531 503 SUPERFAMILY Protein kinase-like (PK-like) 165 460 IPR011009 -
Pumo4g00531 503 MobiDBLite consensus disorder prediction 102 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00531 Pumo-Chr4 7036360 7041005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00531 17 455 Trihelix Transcription Factor Family AT1G70460 40.312 6.53e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Pumo4g00531 Pkinase 4.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00531 - - gmx:100793499 952.199