Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00528 ATGGAGGCTGAGTTTGGAGGGAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAAGCTGTTGTTGGGAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTCACTGCTCAACCACTGAATTCAGTGCCATCAGATTGTAGGGGTCGCCAGTTTTTCCCACCTCATCCTGAAATTCCTGCAAAAAATGCTAATCCATCTGCCACCAATTTGTCTTCTTCTGTATTCAACTCAGGTGAAGGAAAGAGAGAATTGGAGAAAAGGAGGAGGGGTGTCACAGGTGAAGGTGAAGGAGAGGGGCTGAATGATGAGGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCAAGGTTACCCTCTCATGGTGGAAGGAGAGGAAAAAAATGGAAAGAAGACAAAGGTAATTGGGACAACTACTGCTGCTGCTACTACCTCTAACCGTGCTGTTTGTCAGGTGCAAGATTGCAGGGCTGATCTTAGTAATGCCAAGGATTACCACCGTCGGCACAAGGTTTGTGATGTTCATTCTAAGGCCACTATGGCACTAGTGGGAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGCCTGGCAGGCCACAATAGGAGGAGGAGGAGGAAAACTCATCCTGATGTTACTGTTAATGAAGGCTCTCTTAATGATGAAAGGAGTAGTAGCTATCTGTTAATGAGTCTGTTACGGATACTGACCAATTTACATTCAAATGGCTCAGATCATACAAGGAACCAGGATATTCTTTCTCATCTGCTGAGGAACCTGGCAAGTCTGGCTGGTCCAAATAATGGTAGAAGTTTAGCGTCCTTATTGGAGGACTCTAAAGGTTTGGTAAATGCTGGGATGCCCGGAGCTGCTCATGATAAACCCAACCTTAATTCAAATGTTCCTGAAGCTTCCAGGCCTTCTGGTTCTTCCATCAAGACAGACAATGGCATCATCAATCAGAACCCTCCATTGTCGGTGGTGCAGTGTGAAACAGTGCATGCTAATGGTAGGACCCAAAAGTGCATCCCTTCAGGTGATGGTGGAATAGGAAATTTAAAACCTCCTTCTGGACCACTGCTTTCAAGTGTATGTGAATCAAGGGACAGGCTTTCATCCCAATTAACTGCAGCAGAGACTAAAGTAGGAAGGGGCAGTTTAAATAACATTGACCTTAATAATGTATACAATGATATACAGAATACTGTTGAGAATCCTAAGAAGCCTTATCCTCCTGTGGCTTCAGAGATGGTGTCTATTGATCATCCCTCATGGTTGCAATGTGATTCTCTCAAATCAAGTCCTCCACAGACAAGTGGAAACTCAGATTCAACCTCTACCCAATCACCATCTAGTTACAGTGGAGAGGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTCTTCTCCGATCACAGATTCTCAACTGGTTATCCCACAGTCCCACGGAGATAGAGAGCTATATAAGGCCAGGGTGTATCATATTAACGATATATCTCCGCCTTGAAAAATCTGCATGGGAGGAGCTCTACTGTAATCTAGGATCAAGCTTGAGAAAGCTTCTTGCGGCATCAAATGATTCATTTTGGAGAACAGGATGGGTATATGCAAGGGTGCAGCACTCTGTAGCTTTTCTGTATAACGGTCAGGTAGTCTTAGATGTGCCCTTGCGTCTCAAAAGCCCACAACATTGTATGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGTGCTCAATTTATTGTGAAAGGTTTCAACCTTTCCCAGTCTAGCACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACATGCTAGTTGTCATGATTTGATTGATGGAGCTGATGCACCCATTCAGCATCTCAGCTTCTCTTGTCATATGCCAAATGTAACTGGGAGGGGGTTTATTGAGGTGGAAGATCATGGTCTTAGTAGCTGTTCCTTTCCATTTATAGTTGCAGAGCAAGAAGTTTGTTCAGAGATCTGCAAGCTGGAGAATGTGATTGAGGCAGCTGAAACCACTGATGACATCCAGATTAAAAACCAACAAATGGAAGAAAGGAATCAAGCTATGGATTTCTTGCAAGAAATGGGTTGGCTCCTTCATAGAAGTCATTTGAAAGTTAGGCTAGGTCCCATGGCTCCTTTCCATGATCTCTTCCAATTCAATCGGTTCATGTGGCTTGTTGACTTCTCCATGGACCATGGTTGGTGTGCTGTGGTGAAGAAACTCTTGGACATTATATTTGAGGGTGGTGTTGATTTAAGAGAGCATGCCTCCATTGAGCTTGCATTGTTAGACACGGGTCTTCTACACAGAGCTGTGAAGAGAAACTGTAGGCCTATGGTAGAACTACTGTTAAGATTTGTGCCAGTTAAAACCTCAGATGGTGCTGACAGTGAAGTGAAGCAAGTTGACAATGCCCCTGAAAGATTCTTATTTAGACCTGATACTGTTGGGCCTGCTGGGTTGACTCCTCTTCATGTTGCTGCTAGTATGAGTGGCTCGGAAAACGTGTTGGATGCATTAACTGATGATCCAGGAGTGGTAGGAATTGAGGCATGGAAAAGTGCCCGGGACAGTACAGGTTTGACCCCCAACGACTATGCATGCCTTAGGGGCTATTACTCCTACATTCAACTTGTCCAGAAGAAGACCAACAAAAAAGGTGAAAGACAACATGTGGTTGATATCCCTGGCACTGTTGTGGATAGTAACACAAAGCAGAAGCAATCAGATGGGAATAGGACATGTAAAGTTTCAAGTTTACAGACTGAGAAGATTGAAACCACAGCAATGCCACGTCAATGTAGGGTATGCCAGCACAAGGTGGCTTATGGTGGCAAGGGAACAACACTGGTTTATAGGCCAATCATGCTCTCCATGGTGACCATAGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCTAGAGTTTACTATGTGTTCCAGCCCTTCAACTGGGAATCATTGGAGTATGGGGCAATGTAA 3123 0.4432 MEAEFGGKNQYLYGPVVSGMKKAVVGNGKRSLEWDLNDWRWDGDLFTAQPLNSVPSDCRGRQFFPPHPEIPAKNANPSATNLSSSVFNSGEGKRELEKRRRGVTGEGEGEGLNDEGGSLSLNLGGQGYPLMVEGEEKNGKKTKVIGTTTAAATTSNRAVCQVQDCRADLSNAKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRRKTHPDVTVNEGSLNDERSSSYLLMSLLRILTNLHSNGSDHTRNQDILSHLLRNLASLAGPNNGRSLASLLEDSKGLVNAGMPGAAHDKPNLNSNVPEASRPSGSSIKTDNGIINQNPPLSVVQCETVHANGRTQKCIPSGDGGIGNLKPPSGPLLSSVCESRDRLSSQLTAAETKVGRGSLNNIDLNNVYNDIQNTVENPKKPYPPVASEMVSIDHPSWLQCDSLKSSPPQTSGNSDSTSTQSPSSYSGEAQSRTDRIVFKLFGKDPNDFPLLLRSQILNWLSHSPTEIESYIRPGCIILTIYLRLEKSAWEELYCNLGSSLRKLLAASNDSFWRTGWVYARVQHSVAFLYNGQVVLDVPLRLKSPQHCMISCIKPLAVPASASAQFIVKGFNLSQSSTRLLCALEGKYLVHASCHDLIDGADAPIQHLSFSCHMPNVTGRGFIEVEDHGLSSCSFPFIVAEQEVCSEICKLENVIEAAETTDDIQIKNQQMEERNQAMDFLQEMGWLLHRSHLKVRLGPMAPFHDLFQFNRFMWLVDFSMDHGWCAVVKKLLDIIFEGGVDLREHASIELALLDTGLLHRAVKRNCRPMVELLLRFVPVKTSDGADSEVKQVDNAPERFLFRPDTVGPAGLTPLHVAASMSGSENVLDALTDDPGVVGIEAWKSARDSTGLTPNDYACLRGYYSYIQLVQKKTNKKGERQHVVDIPGTVVDSNTKQKQSDGNRTCKVSSLQTEKIETTAMPRQCRVCQHKVAYGGKGTTLVYRPIMLSMVTIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGAM 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00528 1040 MobiDBLite consensus disorder prediction 456 485 - -
Pumo4g00528 1040 Gene3D - 777 944 IPR036770 -
Pumo4g00528 1040 MobiDBLite consensus disorder prediction 74 90 - -
Pumo4g00528 1040 MobiDBLite consensus disorder prediction 225 246 - -
Pumo4g00528 1040 SUPERFAMILY SBT domain 158 237 IPR036893 GO:0003677|GO:0005634
Pumo4g00528 1040 Pfam SBP domain 160 234 IPR004333 GO:0003677
Pumo4g00528 1040 ProSiteProfiles Zinc finger SBP-type profile. 157 234 IPR004333 GO:0003677
Pumo4g00528 1040 MobiDBLite consensus disorder prediction 91 108 - -
Pumo4g00528 1040 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 84 923 IPR044817 GO:0003677
Pumo4g00528 1040 MobiDBLite consensus disorder prediction 313 337 - -
Pumo4g00528 1040 SUPERFAMILY Ankyrin repeat 807 922 IPR036770 -
Pumo4g00528 1040 Gene3D - 151 221 IPR036893 GO:0003677|GO:0005634
Pumo4g00528 1040 MobiDBLite consensus disorder prediction 65 119 - -
Pumo4g00528 1040 FunFam Squamosa promoter-binding-like protein 14 151 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00528 Pumo-Chr4 7005658 7011958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00528 27 1039 SBP-box Gene Family AT3G60030 47.430 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo4g00528 SBP 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00528 - - gsj:114419913 1805.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00528 4 7005658 7011958 Pumo4g00528 4 7005658 7011958 ECH
Pumo4g00528 4 7005658 7011958 Pumo2g01864 2 35605756 35616793 PCT