Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00519 ATGATGGCTGAGACCACAAAATACATTCCCAACTCACAATTAGTAGAGCTTGAAGAGATATTGCATGAAGCAGAACATCGGTGGCTTCGACCTGCTGAAATATGTGAGATACTTCGCAATTATAAGAAGTTTAAGTTAACACCAGATCCACCTGTTATGCCTACAGCTGGATCACTATTCTTGTTTGATCGAAAAGCACTTCGTTACTTTCGCAAGGATGGTCACCGGTGGAGGAAGAAAAAAGATGGGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTACTATGCTCATGGTGAGGATAATGAAAACTTCCAACGGAGAAGTTATTGGATGCTTGACGAGAAGTTAGAGCACATTGTCCTTGTGCATTATCGTGATATTAAAGAGGGCTGCAAGTCTGGCATATCACATTTGCCTGTAGTTCCAGTAACCCTGGTTGGTAGTTCTCAAAATAGTTCAGTGCTTTGCTCTACCAAAATAAACTCACCAATATCTGTAGTTCAGACATCTTTCACATCAAGTGCAAATAAAGTTGATCAGAATGGACGAGCTTCAGAGTACGCGGATGTCAATTCACAAAATGGTCCTCGAACCTCCTCTCATGCTCAACCTATCAGCAATTCCATACTTCGCAGTGCACCTCGGCTTACACATGAAGCTGCTGGGTTTTCTGAGTTGTTGAGGAACCCCTTGATTCCATCGTGGTCATCTTCTTTCCCTAGCTACTCTCCTGGTACTGGCTTGTCTCCCTGGACCTTAATTCGGAACTCTAGCAGAAACACAATTAATATGCATGATGGAAAACATCATGTTGAAGGATCTGTTGAAGGCTCTGAAGCTGACTTAACTGTTCATAAGCTACGCAATGCCGGGTTAGATGCTGTGCACAGAATGCAACATGGTGTAATTTTCAGAGATAGGCTCATCACTGACATGTGCATCCAGCCAGTTAAAGAAGATTTGCCTACTGTTAATCAGGTGCAAAACAAGCATGGTCTAGATTCATTTCCTGCTCAATTCCATGATCGTAATGATCATCCAGTTGTTTCAACTACTACAATCCTAGTTGAACAGAAACTTCAAGATGGTGGTTCAGACAGTGATGAATCGGAACAAGTTGAATCTGGGGAAATGAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGTAATTATTGGAGCACACTTGATGCTCATAATGAGGATAAGGAGGTATCTAGTTTACGCCACATGCAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACATTTCTCCAGATTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTGGGGAGTAAAAAGCTCTCTAGTGAGACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAGTTTTGGCGGATAATGTCATAAGGTGTCAGACTCCTTTGCATTCACCTGGACGTGTACCCTTCTATATTACCTGCAGTAATAGGTTAGCCTGTAGTGAGGTCAGGGAATTTGAATTTGATGAAAATCCAACCAAACTTTTAGGTCCTGTGGGTATTAAAATCTCACCAGAAGAAGAGGTACAACTTCAAATGCGACTTCTTAAACTAGTAGACTTGGGACCTGACAATAAGTGGTTGAAGTGCTCTGTTTCAGAATGTGAAAAATGTAAACTCAAGGGAACAATGTATTCCATGAGAGATGATAGTGGAGTATTTGAAAAAACTTTCCAGATTGATGGAATTGGTCATATAAACCATAGAGATGTATTATTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTGATATATACGGTTCATGAAGGAGGAAAAGGACCACATGTGTTGGATGATGAAGGACAAGGAGTAATACATTTGGCAGCGGCACTTGGTTATGTGTGGGCTATTGCCCCATTAGTTGCAGCTGGTATCAGTCCTAACTTCAGAGACTCTCGTGGAAGAACAGGACTTCACTGGGCATCATATTTTGGGAGAGAAGAAACTGTTATTGTGCTAGTTCAATTAAGTGCAGTCCCAGGTGCTGTTGAGGATCCAACATCAGCATTTCCTAGAGGACAAACTGCAGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGGCAGATCTGATTAATCAATTATCTGTATTGACTGTCAAGGAAAATGAAACTGGCAACATTACTACAACTATAGCAGCTAACAGTGCTTTTCAGTCTGTTGAAGATGACTCATCTGAATATGACAATGGATGA 2379 0.4119 MMAETTKYIPNSQLVELEEILHEAEHRWLRPAEICEILRNYKKFKLTPDPPVMPTAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDEKLEHIVLVHYRDIKEGCKSGISHLPVVPVTLVGSSQNSSVLCSTKINSPISVVQTSFTSSANKVDQNGRASEYADVNSQNGPRTSSHAQPISNSILRSAPRLTHEAAGFSELLRNPLIPSWSSSFPSYSPGTGLSPWTLIRNSSRNTINMHDGKHHVEGSVEGSEADLTVHKLRNAGLDAVHRMQHGVIFRDRLITDMCIQPVKEDLPTVNQVQNKHGLDSFPAQFHDRNDHPVVSTTTILVEQKLQDGGSDSDESEQVESGEMKKLDSFGRWMDKEIGGDCDNSLMASDSGNYWSTLDAHNEDKEVSSLRHMQLDMDSLGPSLSQEQLFSIHDISPDWAYTGVRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAEVLADNVIRCQTPLHSPGRVPFYITCSNRLACSEVREFEFDENPTKLLGPVGIKISPEEEVQLQMRLLKLVDLGPDNKWLKCSVSECEKCKLKGTMYSMRDDSGVFEKTFQIDGIGHINHRDVLFQRLMRDKLYEWLIYTVHEGGKGPHVLDDEGQGVIHLAAALGYVWAIAPLVAAGISPNFRDSRGRTGLHWASYFGREETVIVLVQLSAVPGAVEDPTSAFPRGQTAADLASSRGHKGIAGYLAEADLINQLSVLTVKENETGNITTTIAANSAFQSVEDDSSEYDNG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00519 792 Pfam CG-1 domain 23 136 IPR005559 GO:0003677
Pumo4g00519 792 FunFam Calmodulin-binding transcription activator 2 449 546 - -
Pumo4g00519 792 MobiDBLite consensus disorder prediction 187 215 - -
Pumo4g00519 792 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 17 787 - -
Pumo4g00519 792 SUPERFAMILY Ankyrin repeat 639 750 IPR036770 -
Pumo4g00519 792 SUPERFAMILY E set domains 456 541 IPR014756 -
Pumo4g00519 792 CDD IPT 455 541 - -
Pumo4g00519 792 Gene3D Immunoglobulins 449 547 IPR013783 -
Pumo4g00519 792 Pfam IPT/TIG domain 456 532 IPR002909 -
Pumo4g00519 792 ProSiteProfiles CG-1 DNA-binding domain profile. 17 143 IPR005559 GO:0003677
Pumo4g00519 792 Gene3D - 626 757 IPR036770 -
Pumo4g00519 792 SMART CG_1_2 20 138 IPR005559 GO:0003677
Pumo4g00519 792 SMART ANK_2a 688 717 IPR002110 GO:0005515
Pumo4g00519 792 SMART ANK_2a 727 755 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00519 Pumo-Chr4 6924668 6931043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00519 388 763 CAMTA Transcription Factor Family AT2G22300 41.327 8.18e-93 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00519 K21596 - gmx:100818336 1444.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00519 4 6924668 6931043 Pumo4g00519 4 6924668 6931043 ECH