Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00518 ATGGGTCACTTTGAGGATTATTTACATTTTGCAGCTTTAAAGATTCAAAAGAGATATCAGGGATGGAAAGGAAGAAAAGATTTTTTGAAGATACGTGACCGCATTGTAAAAATCCAGGCTCATATTAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTGTGTGGTCTGTTAGCATTGTGGAAAAGGCAATCCTGCGCTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGTTCGGCAGCCAGTTGGTGTTGTGGCTAAAGATGCTGAGAAAAGTGATGAGTATGAATTTCTTAGCATTGGGAGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTAGATAGAGTCAAGTCCATGGTTCGTGACCCAGAGGCAAGGGATCAGTATATGAGGCTCATCATGAAATATGAAAAGTTTAAGATTGATGATGGCAGAAGCAGTCAATCACAGCATGTCGGTTAG 468 0.4209 MGHFEDYLHFAALKIQKRYQGWKGRKDFLKIRDRIVKIQAHIRGHQVRKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRVRQPVGVVAKDAEKSDEYEFLSIGRRQKSDDVKKALDRVKSMVRDPEARDQYMRLIMKYEKFKIDDGRSSQSQHVG 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00518 155 ProSiteProfiles IQ motif profile. 8 37 IPR000048 GO:0005515
Pumo4g00518 155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 59 IPR027417 -
Pumo4g00518 155 Gene3D - 6 55 - -
Pumo4g00518 155 ProSiteProfiles IQ motif profile. 31 59 IPR000048 GO:0005515
Pumo4g00518 155 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 3 139 - -
Pumo4g00518 155 Pfam IQ calmodulin-binding motif 11 28 IPR000048 GO:0005515
Pumo4g00518 155 Pfam IQ calmodulin-binding motif 33 52 IPR000048 GO:0005515
Pumo4g00518 155 SMART iq_5 7 29 IPR000048 GO:0005515
Pumo4g00518 155 SMART iq_5 30 52 IPR000048 GO:0005515
Pumo4g00518 155 FunFam Calmodulin-binding transcription activator 2 7 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00518 Pumo-Chr4 6923267 6924489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00518 2 151 CAMTA Transcription Factor Family AT5G64220 54.248 2.58e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00518 K21596 - gmx:100818336 301.597