Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00509 ATGAATTTTATCCCGAATGTGCGTTCTGGGAGCTATGCTGAGATTGGACCACGGGTTTCTATGGATGATGAACACATTTGTATTGATGATCTAGGTGCTCATCTTGGATTTGTGTTCAAGTGCCCAATACCAAGTGCATTTTATGCAGTTTTTGATGGTCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGAGGAATGCTATGAGATTGTTTTTTGAAGATGCGGACATGCTGCAGTCATATGATACTGATGTGTTTTTTCTACAAAAGTTGGAGGATTCCCATCGGAGAGCTTTTCTACGGGCTGATCTTGCCTTAGCTGATGAACAAACTGTTAGTAGTTCATGTGGGACTACTGCGTTGACTGCCCTTGTGCTTGGAAGACATTTGCTTGTTGCTAATGCTGGTGACTGTCGAGCAGTTCTTTGCCGGAGAGGTGTGGCTGTTGATATGTCTAATGATCACAGGCCAACTTATCTACCGGAACAGAGGAGGGTGGAGGAGTTAGGTGGGTTCATTAATGATGGATATCTCAACAATTATCTTTCAGTAACCCGTGCCCTTGGGGATTGGGACTTGAAATTTCCACTCGGTGCTGCATCTCCTCTTATTGCTGAGCCAGATGTTCGACTGGTTACATTGACTGAGGCTGATGAGTTCTTGATCATTGGGTGCGATGGGATTTGGGATGTCATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGAGGATTAAGAAGGCATGATGACCCACAGCAATGTGCCAGAGAACTAGTCAAGGAAGCATTGCGCCTAAATACATCAGATAATCTCACTGTGATTGTTGTATGCTTGTCGCCCATTGAAAGCATTGTTGAATCATGTCCACCCCAAAGGCGAAGATTCAAAGCTTGCAATCTGTCTGAAGAGGCCTGTAATAGATTGAAGAGCTTGATAGAGGGAAATTGA 948 0.4451 MNFIPNVRSGSYAEIGPRVSMDDEHICIDDLGAHLGFVFKCPIPSAFYAVFDGHGGPDAAAFVKRNAMRLFFEDADMLQSYDTDVFFLQKLEDSHRRAFLRADLALADEQTVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVDMSNDHRPTYLPEQRRVEELGGFINDGYLNNYLSVTRALGDWDLKFPLGAASPLIAEPDVRLVTLTEADEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHDDPQQCARELVKEALRLNTSDNLTVIVVCLSPIESIVESCPPQRRRFKACNLSEEACNRLKSLIEGN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00509 315 PANTHER PROTEIN PHOSPHATASE 2C 12 276 IPR015655 GO:0004722|GO:0006470
Pumo4g00509 315 CDD PP2Cc 7 278 IPR001932 -
Pumo4g00509 315 Gene3D - 4 281 IPR036457 -
Pumo4g00509 315 Pfam Protein phosphatase 2C 18 270 IPR001932 -
Pumo4g00509 315 ProSiteProfiles PPM-type phosphatase domain profile. 8 278 IPR001932 -
Pumo4g00509 315 SUPERFAMILY PP2C-like 4 280 IPR036457 -
Pumo4g00509 315 ProSitePatterns PPM-type phosphatase domain signature. 47 55 IPR000222 GO:0043169
Pumo4g00509 315 SMART PP2C_4 1 276 IPR001932 -
Pumo4g00509 315 FunFam Probable protein phosphatase 2C 22 1 281 - -
Pumo4g00509 315 SMART PP2C_SIG_2 23 278 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00509 Pumo-Chr4 6782095 6784543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00509 2 315 PP2C-type Phosphatase Gene Family AT1G48040 63.291 5.98e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00509 K14803 - gmx:100775577 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00509 4 6782095 6784543 Pumo4g00509 4 6782095 6784543 ECH
Pumo4g00509 4 6782095 6784543 Pumo2g00058 2 1268781 1271318 PCT