Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00504 ATGGATGAAATTAAAGGAACAAGAAGCCAGCTTATAAGTAGTGAGGACGATATGGACCTTCGCAGAGGCCCTTGGACCGTCGATGAGGACCTCACTCTTATCAATTACATTGCCACTCATGGCGAAGGTCGCTGGAATACCCTCGCCCTCTCTGCTGGGCTGAAACGAACGGGGAAGAGTTGTAGATTGAGGTGGCTGAACTATCTCCGTCCTGATGTTCGACGTGGAAACATCACACTTGAAGAACAACTTTTGATTCTGGAGCTCCATTCTCGCTGGGGAAACCGATGGTCGAAAATTGCTCAATATTTGCCTGGTAGAACCGACAATGAGATAAAGAACTATTGGAGAACTCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGTTACCTTTGGATGCCAAGGCTGGTAGAACGCATTCAAGCAGCCACAGTTGCCTCAGCCACCACAACCGCTGCCACGACCGCCACCACAACCACAACTGTTACCACCAACAATGAATACATCTACGGGAACAACCTCAATAACAACAAATTTGATGTTCATAATCACAAGAGCAAAATGGGGTTAACCGATCCTTCAGTTATGAACAATGACTTTGTGAGTTCACATGTCAAGCAAAGTTATACTCCTGAGAATAGTAGCACTGCTGCGTCATCATCAGACTCGTTTGGGACTCAAGTCTCAACAATTTCTGATTTGACTGATTATTACAGTGTCCCAGTCAGTGGTAACAATAACAATACTAATTCTGCAGATTATTATCAACCCTCTCAAATTAGTTACTCAGATTGCATCACAAGCCCATCTGGGTTGTTCCCTCAAGGACTAGATTTTCAATCCATGGATCCAAACACCCCGTGGAACATGCAAAGTGGGGACTCGTCTGACAATTTTTGGAACGTTGAAAGCATGTTGTTCTTAGAGCAGCAACTCATGAATGACAACATGTGA 990 0.4455 MDEIKGTRSQLISSEDDMDLRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAATVASATTTAATTATTTTTVTTNNEYIYGNNLNNNKFDVHNHKSKMGLTDPSVMNNDFVSSHVKQSYTPENSSTAASSSDSFGTQVSTISDLTDYYSVPVSGNNNNTNSADYYQPSQISYSDCITSPSGLFPQGLDFQSMDPNTPWNMQSGDSSDNFWNVESMLFLEQQLMNDNM 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00504 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Pumo4g00504 329 Gene3D - 79 142 - -
Pumo4g00504 329 CDD SANT 24 69 IPR001005 -
Pumo4g00504 329 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Pumo4g00504 329 FunFam MYB transcription factor 79 142 - -
Pumo4g00504 329 FunFam Myb transcription factor 22 74 - -
Pumo4g00504 329 CDD SANT 95 118 IPR001005 -
Pumo4g00504 329 Gene3D - 19 75 - -
Pumo4g00504 329 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pumo4g00504 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Pumo4g00504 329 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 213 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo4g00504 329 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Pumo4g00504 329 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Pumo4g00504 329 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Pumo4g00504 329 SMART sant 74 122 IPR001005 -
Pumo4g00504 329 SMART sant 21 71 IPR001005 -
Pumo4g00504 329 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00504 Pumo-Chr4 6702351 6705066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00504 1 320 MYB Transcription Factor Family AT3G06490 54.118 2.54e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g00504 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00504 K09422 - gmx:100791349 565.459