Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00476 ATGAGTTACCACAACGCGCGCCGGAGCCCAGGGGGGTTCCGCTCCGGCCACCGCGCCTTCGACAGTCCTCCGCGTCGCTCTCCCGGCAGGGGCGGAGGATTCCGGCCGATGGGCGGCGAGGGTCCTGGGGAATTCGGATTCAACGGCCACCAGGCGCCGCCGCTCGCTGGCCACAAACGAGCCTTTCCTTTCTCCGGTCGCGGTGGTGCTTCGCCCGATCGTTTAGATGGTGGGAATTTTGCCAAACTTTTTGTTGGATCTGTTCCCCGAACAGCCACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCGGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGAGAACGCCTCGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACTGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGTCGGGTTGAAGATGTTTATCTTATGCGCGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCGCACAGAGATATGGCTCTGGCAGCAATTAATGAACTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGTCAAGGAGATTCCAGGGGTCTTGCATTTGGAGGCCCAGGATTTGGTCCAAGATTTGATGCACCAGGCACAAGACTTCCATCCAATATTACAGATCCTATGGGTGATCGTATGCCTCCTCCTAATGCTTGGCGTCCCATGCATCCGCCAAATATGGGGCCATCTTCTAATGCTGGTCTTCATGGCATGGGGCCACCGTTGCTTCCAAGATCTGGTGACATGGCATTGCCTACAAATGCAGGTGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCGATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCAGTCAATCAACAAATATCACCAGTGCAGAAACCTATTCAATCATCCCAGGAACTGCCACCTTCCCACCAGTTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTCTTAGGCAGCATGGCCAGCCACAACTTCCTCTCTCTGCTGGTCCTCTTCCATCTCAGCAGATACATGGAGTAAGTGGACAGTTTCAAACTTCTCAGCCCCAAACTAAACAGAGTGCTTTGCCTGCTGCAATTCCTCAGACCCCTCTTGATACCGGCATGCAGTCTAATACTGCATTAACTACTCCAAATCAACAGCAAGTTCCTCCCTCTATGCAGCAGCAGCCACTTCATCAATCCCCTTCTCCGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAACCTTCTAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCTACCAAAAAGCAGTCTCAATGGGCTGGGCCTGGGACTGTAGCTCATGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAATCAGAACATGGCTCTTGCCAAATGTAATTGGACAGAGCATATATCTCCCGAGGGCTTCAAGTACTACTATAATAGTGTCACCGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACATTATATGAACAGCAAAAGCAACAGCAAAGGTCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCACAAATCCAACAGGTTCAGCCTCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCAGCCTTCTTCATTCCAGGCATATGGAGTTACAGGCCCTCAAAATGTCCAGGAAGTGGGTTATAAACAGTTACAGGGATCGGTTATTTCTGCTGGTGATCCTGGACGCTACTCACAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGTTCCCATCCTTGA 2175 0.4851 MSYHNARRSPGGFRSGHRAFDSPPRRSPGRGGGFRPMGGEGPGEFGFNGHQAPPLAGHKRAFPFSGRGGASPDRLDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINELNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRLPSNITDPMGDRMPPPNAWRPMHPPNMGPSSNAGLHGMGPPLLPRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQNFNQPMPQIPPVNQQISPVQKPIQSSQELPPSHQLYPQAPVPYPQTSLRQHGQPQLPLSAGPLPSQQIHGVSGQFQTSQPQTKQSALPAAIPQTPLDTGMQSNTALTTPNQQQVPPSMQQQPLHQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAEATKKQSQWAGPGTVAHAAAPAADVPSSTPANSALPAINQNMALAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQKQQQRSSVQQSQTQSQPSILPAQQVPQIQQVQPQSHLQGQVLHQQQIQQPSSFQAYGVTGPQNVQEVGYKQLQGSVISAGDPGRYSQGIHSTQELMWKNKPAGSHP 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00476 724 MobiDBLite consensus disorder prediction 530 545 - -
Pumo4g00476 724 ProSitePatterns WW/rsp5/WWP domain signature. 584 609 IPR001202 GO:0005515
Pumo4g00476 724 SMART rrm1_1 173 248 IPR000504 GO:0003723
Pumo4g00476 724 SMART rrm1_1 82 158 IPR000504 GO:0003723
Pumo4g00476 724 MobiDBLite consensus disorder prediction 1 73 - -
Pumo4g00476 724 MobiDBLite consensus disorder prediction 701 724 - -
Pumo4g00476 724 MobiDBLite consensus disorder prediction 530 566 - -
Pumo4g00476 724 FunFam flowering time control protein FCA isoform X2 75 167 - -
Pumo4g00476 724 MobiDBLite consensus disorder prediction 252 288 - -
Pumo4g00476 724 Pfam WW domain 583 609 IPR001202 GO:0005515
Pumo4g00476 724 Gene3D - 167 260 IPR012677 -
Pumo4g00476 724 ProSiteProfiles WW/rsp5/WWP domain profile. 584 611 IPR001202 GO:0005515
Pumo4g00476 724 Gene3D - 76 166 IPR012677 -
Pumo4g00476 724 Gene3D - 579 629 - -
Pumo4g00476 724 FunFam Flowering time control protein FCA 168 258 - -
Pumo4g00476 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 252 IPR000504 GO:0003723
Pumo4g00476 724 PANTHER RNA BINDING PROTEIN 59 510 - -
Pumo4g00476 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 146 IPR000504 GO:0003723
Pumo4g00476 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Pumo4g00476 724 SUPERFAMILY RNA-binding domain, RBD 172 273 IPR035979 GO:0003676
Pumo4g00476 724 MobiDBLite consensus disorder prediction 615 649 - -
Pumo4g00476 724 CDD WW 581 611 IPR001202 GO:0005515
Pumo4g00476 724 SUPERFAMILY RNA-binding domain, RBD 69 166 IPR035979 GO:0003676
Pumo4g00476 724 SUPERFAMILY WW domain 583 616 IPR036020 GO:0005515
Pumo4g00476 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 162 IPR000504 GO:0003723
Pumo4g00476 724 SMART ww_5 579 611 IPR001202 GO:0005515
Pumo4g00476 724 MobiDBLite consensus disorder prediction 358 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00476 Pumo-Chr4 6298847 6309859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00476 81 287 Eukaryotic Initiation Factors Gene Family AT1G71770 24.155 3.84e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00476 - - gmx:100798390 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00476 4 6298847 6309859 Pumo4g00476 4 6298847 6309859 ECH