Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00475 ATGGAGGAGAAGAGAGAGAAAGAGGGAAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCGAACATGAGCATGAGCACAAGCTTCCCTTTCTCCCCTGCTTTCTCCAGCATCTTTGACATCATGCCACCACCACCATCCTCATCTATTCCTGGCTTCATGGACTTGCTCGCTGTCCCTGATTATAGCCCTTCTTTATTCGATTGGCCCCAAAACATCGCCGCCACCTCACCACCACCACCACCACCACCCTTCACCCACCCTCTTCCGTCGCCGGCCAGCTCCAATGTCCCCGACGGCTCCGAGGTCCTCAACACTCCGGCCTCTCCCAACTCTTCCTCTATATCGTCGTCGTCGAACGAAGCGGCCGCCACCGCCGCCAACAAAGCCACTGGAAATGATAATGAAGCCGAAGATGAAACCATAGACGCAGCAGCAGCCAAAGGAGAAGAAGATCAAGACCAAGACAAGACTAAGAAACAGCTGAAGCCAAAAAAGAAGAACCAAAAAAAGCAAAGAGAGCCAAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGGTGGCGCAAGTACGGTCAAAAAGCCGTAAAAAATAGCCCACATCCCAGGAGCTATTATCGTTGCACCACCGCGACATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGACCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCGTGTCCTGCCACGTCACGGGCTAGCCTCGGCTTCATGCACTCCGAAGCAAGTGGGTTCGGACCCACTAGTGGACTCGCTTCGCCGCACTTTATGCTGTCACAGCAACAGCTTCGGGACCAAGCACAAGCAGCAATGTTATATAACTCCACCTCATCGCCACTGAATGTTGTTAACTCAGCTTCTTGTGTTAATAGCTATGCCAATACGTCGTCGTTGAGTGGTTTCCTTCAGAATCAGCAGCGAGGTTTTGTGCCGTCTAGGGTGGTGGGTCCTCATGCTTTCTTGAGGGACAATGGGCTTCTTCAGGACATTGTGCCAACGCAGATGAGGAATGAGGAGAATGAAGATCGTGTGTAG 1116 0.5242 MEEKREKEGNSKSSSTMANSVAFSDEIPNMSMSTSFPFSPAFSSIFDIMPPPPSSSIPGFMDLLAVPDYSPSLFDWPQNIAATSPPPPPPPFTHPLPSPASSNVPDGSEVLNTPASPNSSSISSSSNEAAATAANKATGNDNEAEDETIDAAAAKGEEDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTATCGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASLGFMHSEASGFGPTSGLASPHFMLSQQQLRDQAQAAMLYNSTSSPLNVVNSASCVNSYANTSSLSGFLQNQQRGFVPSRVVGPHAFLRDNGLLQDIVPTQMRNEENEDRV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00475 371 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 291 IPR044810 GO:0003700
Pumo4g00475 371 MobiDBLite consensus disorder prediction 1 20 - -
Pumo4g00475 371 ProSiteProfiles WRKY domain profile. 190 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00475 371 SMART WRKY_cls 195 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo4g00475 371 MobiDBLite consensus disorder prediction 99 139 - -
Pumo4g00475 371 Gene3D WRKY domain 182 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g00475 371 MobiDBLite consensus disorder prediction 140 168 - -
Pumo4g00475 371 SUPERFAMILY WRKY DNA-binding domain 187 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo4g00475 371 MobiDBLite consensus disorder prediction 81 98 - -
Pumo4g00475 371 FunFam WRKY transcription factor 57 181 255 - -
Pumo4g00475 371 MobiDBLite consensus disorder prediction 74 184 - -
Pumo4g00475 371 Pfam WRKY DNA -binding domain 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00475 Pumo-Chr4 6290766 6293746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00475 110 366 WRKY Transcription Factor Family AT2G47260 50.186 2.39e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo4g00475 WRKY 2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00475 - - gmx:100788697 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00475 4 6290766 6293746 Pumo4g00475 4 6290766 6293746 ECH