Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00473 ATGGCATCATCATCGTCGTCACCATCACCATCATCGTCTATGATCTCAAACCCGGTCCCGAACACGGACCGGTCACGTGACGCGAAGAGACGGAGGAAGAAGAAAGCGCAGCTGAGGCAACAGCAAGAGGATCAGAGCCGGCCGAAGTGGAAATCCCAAGCGCAGCAACAAATCTACTCCTCCAAGCTGCGCCAAGCCTTAGCCAGAGTGAACCTCGGCTCGGCGCCGCGCCGAGGCAAAGCCGTGCGCGAAGCCGCAGACAGAGTCCTGGCCGTGACGGCCAAGGGGAGGACGCGCTGGAGCCGAGCCATCCTCACCAACCGGCTCAAGCTCAAGTTCACCAAACACAAGCGACAGAGAGTTACAACACCAGCCCCAACCCGGTCAAAGAAACCCCGGGTCAGCGTTTACCGGCTGAAGGGGAAGAGTTCACCGGGTGTGCAGAGAAAAGTGAGGTTCCTCGGACGCTTAGTTCCCGGTTGCCGAAAAGAACCGTTACCGGTTATTTTGGAAGAAGCTATTGATTACATTCCTGCTCTTGAGATGCAGATTCGAGCCATGAGCGCTCTTTTTAACCTTCTCTCTGGTTCTTCTTCTTCCAGCGCCGCCTCCACTTCCGCGCCACCTAGCTCCTAA 636 0.5676 MASSSSSPSPSSSMISNPVPNTDRSRDAKRRRKKKAQLRQQQEDQSRPKWKSQAQQQIYSSKLRQALARVNLGSAPRRGKAVREAADRVLAVTAKGRTRWSRAILTNRLKLKFTKHKRQRVTTPAPTRSKKPRVSVYRLKGKSSPGVQRKVRFLGRLVPGCRKEPLPVILEEAIDYIPALEMQIRAMSALFNLLSGSSSSSAASTSAPPSS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00473 211 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 52 197 IPR044660 GO:0006355
Pumo4g00473 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 198 IPR036638 GO:0046983
Pumo4g00473 211 MobiDBLite consensus disorder prediction 1 22 - -
Pumo4g00473 211 CDD bHLH_AtIBH1_like 138 190 IPR044549 GO:0006355
Pumo4g00473 211 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00473 Pumo-Chr4 6258087 6259543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00473 46 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 55.215 1.34e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00473 - - gmx:100803765 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00473 4 6258087 6259543 Pumo2g00086 2 1827689 1828183 PCT