Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo4g00471 | ATGGAATCTGGAAACCCTTCAACGCCTCCCGAATCGCCAACCTCTCCTTCCGTTGGTTTCAACACCGACCAACTTCCTCACACCCACACCAGCCGTGCCTCCGAAGACGATGAGGCTTCCGTCGATCCTGACATCATACGAGACGAAGTCGAAGAACAACCCGAGGAAGAAGATGGAGAAGATCTTTACAATGACAATTTTTTGGATGATTATAGGAGAATGGATGAGGCTGACCAGTTCGAATCGTTTGGGCTGGATGACTCGTTGGAAGATGACAGAGATTTTGATCAGATCATGCAGGATCGAAGGGCTGCGGAGGTTGAACTCGACACACGCGATGGTCGCGTTTCCAATCGCAACAAACTTCCCCAGCTTCTCCACGACCAGGACACAGATGATGACAGTCACAGGCCTTCCAAAAGGGCTCGAGCTGATTTTAGGCCTTCTGCAGCAAGTGATGATGATCTCGATGGGATGCAAAGTTCACCTGGAAGGTCACAACGAGGGCACTCTAGAGAGGATGTTCCTATGACTGATCAAACTGAGGATGATCGAGATGATGATGATTTTGATGATGGGTACGAGATGTATCATGTTCAAGGAACACTTAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCAAGGAAATTCAAGGACTTCTTACTCACGTATGTTAATCCAAAAAATGAACATCGGGACAAGGAATATGTGTGGTTGATAAATGAGATGGTGTCAGCTAGTAAGTGCAGTTTGGAGATAGATTACAAACAATTTATTTATGTTCATCCAAACATTGCTATTTGGCTAGCTGATGCACCTCAGTCTGTCTTAGAAGTAATGGAAGATGTTACCAAAAGTGTTGTCTTTGAATTACATCCTAATTACAGGAATATACACCAAAAGATTTATGTACGCATAACCAACTTACCAGTTTATGATCAGATTCGAAATATAAGGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGCTGCAGCAGGTGAAGTATGACTGTAACAAATGCGGAGCAATTTTGGGGCCTTTTTTTCAGAATTCCTATTCAGAGGTGAAAGTGGGATCCTGTCCCGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAACAGACAATTTATAGGAATTTTCAGAAGCTTACCCTCCAAGAGAGCCCAGGACTAGTTCCTGCAGGTCGACTTCCAAGATACAAGGAAGTGATACTATTGAATGATCTGATCGACTGTGCTCGCCCTGGAGAAGAAATTGAGGTCACAGGTGTTTATACCAATAATTTCGACTTATCTCTAAACACCAAAAATGGGTTTCCAGTGTTTGCTACTGTTGTTGAGGCAAACTATGTTACGAAAAAGCAAGATCTCTTCTCTGCCTACAAACTTACACAGGAAGACATAGAAGAGATTGAAAATTTGGCCAAAGACCCTCGAATTGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATTTATGGTCACGATGACATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGCCAAGAAAAAAATGTGGATGGAAAGCATCGCCTACGAGGAGACATAAATGTACTTCTTCTTGGTGATCCAGGGACAGCGAAGTCTCAGTTTCTCAAGTATGTTGAAAAAACTGGGCAGAGAGCTGTATACACTACTGGTAAAGGGGCTTCTGCTGTGGGTCTCACAGCTGCAGTTCATAAGGATCCAGTCACAAGGGAGTGGACTCTTGAAGGGGGAGCACTTGTTCTAGCTGACAGAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGACCAGGATAGGGTGAGTATCCATGAAGCCATGGAGCAGCAGAGTATAAGTATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGTTGTTCTGTTATTGCTGCTGCAAATCCTATTGGAGGAAGATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCTATTATTTCTCGTTTTGACATCCTCTGCGTTGTGAAGGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACATTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAATCAAGATGATAAGTCCTATAGTGAGTCCCAAGATGTCCATGCATCTGCCATCCCAGCTGATCCAGAGATACTTCCTCAAGAGCTACTGAAGAAGTACATTACATATGCCAAGTTGAATATTTTTCCAAGGTTACAAGATGCTGATATGGATAAACTGTCACATGTCTATGCCGAACTGCGGAGGGAATCTTCACACGGACAAGGAGTCCCTATTGCTGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTCAGGCAACATGTTACACAAGAGGATGTAGACATGGCAATTCGTGTCCTACTTGAATCATTCATTTCCACTCAAAAATTTGGGGTGCAGAAGGCTCTTCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGACTATAATCAACTGCTCCTTTATATTCTCCGCGAGCTTGTAAAGAATGCTTTGCATTTTGAAGAAATTGTCACAGGATCTGCTTCTGGTCTAACGCACATAGATGTCAAAGTAGATGATCTCTACAACAAGGCTCAAGAGCATGATATTTATGATCTGAAACCCTTCTTCAATAGCAGCCAATTTTCAAGGGCCAATTTTGTATTGGATGAAGAACGGAGAGTGATCAGACATCACCTTACCAGATGA | 2802 | 0.4261 | MESGNPSTPPESPTSPSVGFNTDQLPHTHTSRASEDDEASVDPDIIRDEVEEQPEEEDGEDLYNDNFLDDYRRMDEADQFESFGLDDSLEDDRDFDQIMQDRRAAEVELDTRDGRVSNRNKLPQLLHDQDTDDDSHRPSKRARADFRPSAASDDDLDGMQSSPGRSQRGHSREDVPMTDQTEDDRDDDDFDDGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHRDKEYVWLINEMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKSVVFELHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGLVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDIEEIENLAKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVDGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLATFVVDSHFKSQPKGANQDDKSYSESQDVHASAIPADPEILPQELLKKYITYAKLNIFPRLQDADMDKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNQLLLYILRELVKNALHFEEIVTGSASGLTHIDVKVDDLYNKAQEHDIYDLKPFFNSSQFSRANFVLDEERRVIRHHLTR | 933 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo4g00471 | 933 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 650 | 662 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00471 | 933 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 626 | 639 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00471 | 933 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 598 | 612 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00471 | 933 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 677 | 685 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00471 | 933 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 538 | 553 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00471 | 933 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
| Pumo4g00471 | 933 | Gene3D | - | 345 | 395 | - | - | |
| Pumo4g00471 | 933 | MobiDBLite | consensus disorder prediction | 41 | 64 | - | - | |
| Pumo4g00471 | 933 | Pfam | Mini-chromosome maintenance protein 2 | 36 | 182 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00471 | 933 | Gene3D | - | 318 | 443 | IPR012340 | - | |
| Pumo4g00471 | 933 | ProSitePatterns | MCM family signature. | 606 | 614 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pumo4g00471 | 933 | Gene3D | - | 210 | 314 | - | - | |
| Pumo4g00471 | 933 | Pfam | MCM OB domain | 317 | 444 | IPR033762 | - | |
| Pumo4g00471 | 933 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Pumo4g00471 | 933 | ProSiteProfiles | MCM family domain profile. | 497 | 703 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00471 | 933 | FunFam | DNA helicase | 477 | 850 | - | - | |
| Pumo4g00471 | 933 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 350 | 362 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00471 | 933 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 446 | 457 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00471 | 933 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 461 | 472 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00471 | 933 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 327 | 344 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00471 | 933 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 385 | 399 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00471 | 933 | Gene3D | - | 477 | 850 | IPR027417 | - | |
| Pumo4g00471 | 933 | Pfam | MCM AAA-lid domain | 743 | 827 | IPR041562 | - | |
| Pumo4g00471 | 933 | Pfam | MCM P-loop domain | 484 | 707 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00471 | 933 | SUPERFAMILY | Nucleic acid-binding proteins | 219 | 466 | IPR012340 | - | |
| Pumo4g00471 | 933 | MobiDBLite | consensus disorder prediction | 125 | 152 | - | - | |
| Pumo4g00471 | 933 | CDD | MCM2 | 500 | 826 | - | - | |
| Pumo4g00471 | 933 | FunFam | DNA helicase | 345 | 395 | - | - | |
| Pumo4g00471 | 933 | MobiDBLite | consensus disorder prediction | 106 | 193 | - | - | |
| Pumo4g00471 | 933 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 507 | 830 | IPR027417 | - | |
| Pumo4g00471 | 933 | FunFam | DNA helicase | 210 | 314 | - | - | |
| Pumo4g00471 | 933 | Pfam | MCM N-terminal domain | 218 | 311 | IPR027925 | - | |
| Pumo4g00471 | 933 | SMART | mcm | 314 | 828 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00471 | 933 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 203 | 876 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo4g00471 | Pumo-Chr4 | 6240430 | 6246018 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo4g00471 | 19 | 928 | Core DNA Replication Machinery Family | AT1G44900 | 75.817 | 0.0 | 1371 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo4g00471 | K02540 | - | gmx:100799441 | 1778.45 |