Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo4g00470 | ATGAAATCAGGGAGCTCTTCTTCAACGACCAATCCTGAATCCCCAAACTCTTCTGCTGGTTTCAACGCGGACCAGCTTCCTCACACCCACACCACCAGCCATGCCTCCCAAGACTACGAGGCTTCCGTCGATCATGATATCATACAAGATGATCAAGAAGAACAATCTGGTGGTGAGGAAGAATATGGAGAGGATCTTTATAACGACACTTTTATGGATGATTATAAGGGGATGGAGGACGCTGACCAGTTCGAATCGTTTGGTCTGGATGACTCGTTGGAGGATGACAGGGATTTTGATCAGATCATGGAGGATCGAAGGGCTGCAGAGACTGAACTGGACGCTCGCGATGGTGGCAGAAAACTTTCCCATGGTCGCAGAAAACTTCCCCAGCTACTCCTCGATCAGGTTTCTATTGCGGATATAGATGATGACAGTCACAGGCCTTCTAAAAGGGCTCGAAGTCCCATATCAAGTGATGATGATCTCAATGGGATGCAAAGTTCACCTGGAAGGTCACAACAAGGGCACTCAAGGGATGCTGTTCCTATGACTGATGAAACTGAGAATGATCAAGATGATGGTTACAAACCTCCTTCTGATGATGAAGATGGGCACGATATGTATCGTATCCAAGGAACACTTATAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGAACTTCTTACTCACAAATGTTAATCCAAAAAATGAACATCGGGGCAAGGAATATGTGTGGCTGATAAATGAGATGGTGTCAGCTAGTAAGTGCAGTTTGGAGATAGATTACAAACAATTTATCTCTGTTCGTCCCCACATTGCCATTTGGCTGGCTGATGCGCCTCAGCCTGTCTTAGAAGTAATGGAAGATGTTACCAAAAGCATTGTCTTTGAATTACATCCAAATTACAGAAATGTACACCAAAAGATTTATGTACGAATAGCCAACTTGCCAGTTTATGAGCAGATTCGAAATATAAGCAGGCAGATAAACTTGAATACAATGATTCGAATTGGGGGAGTAGTAACCAGACGCTCTGGAGTTTTGCCCCAGTTGTATCAGGTGAAGTACGATTGTAACAAATGTGGGGCAATTTTGGGACCTTTTTTCCAGAATTCCTATTCAGAGGTGAAAGTGGGATCCTGTCCCGAGTGTCAATCAAAAGGTCCGTTCACTGTCAATATTGAGCAGACAATTTATAGGAATTTTCAGAAACTTACACTGCAAGAGAGCCCAGGAACAGTTCCTGCTGGTCGACTTCCAAGATACAAGCAAGTGATACTATTGAATGATCTGACTGACTGTGCTCGTCCTGGAGAAGAGATTGAGGTTACTGGTGTTTATATTAATAACTTCGACTTATCCCTAAACACAAAAAATGGGTTCCCAGTGTTTGCCACAGTTGTTGAAGCAAATTATGTTACGAAAAAGGAAGACCACTTGTCTTCTTACAAACTCACACAGGAAGACATAGAAGAGATTGAAAATTTGGCTAGAGACCCTCGAATCGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATTTATGGTCACGAGGACATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAAAATGTGGAAGGAAAATATCGCCTGCGAGGAGACATAAATGTACTTCTTCTTGGTGATCCAGGGACAGCAAAGTCTCAGTTTCTCAAGTACGTTGAAAAAACTGGACAGAGAGCTGTATACACTACAGGCAAAGGGGCATCTGCTGTGGGTCTCACTGCTGCAGTTCATAAGGATCCGGTCACGAGGGAGTGGACTCTTGATGGGGGAGCCCTTGTTCTGGCTGACAAAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGACCAGGATAGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCAGGAATTGTCACATCTCTTCAGGCACGCTGTTCTGTTATTGCGGCTGCAAATCCTATTGGAGGAAGATATGATTCCTCAAAAACTTTTTCTCAAAATGTTGAATTGACAGATCCTATTATTTCTCGGTTTGACATCCTCTGCGTTGTGAAGAATGTTGTTGATCCAGTAACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAAGCAAGATGATAAGTCCTTTATTGAGTCCCAAGATGTCCATGCATCTGCAATGCCAACTGATCCAGAGATACTTCCTCAAGAGCTACTGAAGAAGTACATTACATATGCCAAGTTGAATATTTTTCCGAAGTTAGTGAATGTCAATACGTATAAAAATAAAGTGCAAGAAATCTATGCCGAACTGCGGACAAAATCTTCACACGGACAAGGTGTCCCTATTGCCGTAAGGCACATTGAATCAATAATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTCAGACGTCAAGTTACAGAAGACGATGTGAACATGGCAATTAGGGTTCTACTTGAATCATTCATTTCAACACAAAAATTTGGGGTCCAGAAAGCTCTCCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGACTACAATGATTTGCTCCTTTTTATTCTCGGCAACCTTGTACAGAATGCTTTGCATTTCGAAGAAATTATCACCGGATCTGTTTCAGGTCTAACATATGTAGATGTCAAAGTAGATGATCTCTACAACAAGGCACAAGAGCATGAAATTTATGATCTGACAACATTTTTCAAGAGCAGTCAATTTTCAAGGGCCAATTTTGTATTGGATGAAGAACGGAGAGTGATCAGACATTACCTTGCCTGA | 2844 | 0.4205 | MKSGSSSSTTNPESPNSSAGFNADQLPHTHTTSHASQDYEASVDHDIIQDDQEEQSGGEEEYGEDLYNDTFMDDYKGMEDADQFESFGLDDSLEDDRDFDQIMEDRRAAETELDARDGGRKLSHGRRKLPQLLLDQVSIADIDDDSHRPSKRARSPISSDDDLNGMQSSPGRSQQGHSRDAVPMTDETENDQDDGYKPPSDDEDGHDMYRIQGTLIEWVTRDEVRRFIARKFKNFLLTNVNPKNEHRGKEYVWLINEMVSASKCSLEIDYKQFISVRPHIAIWLADAPQPVLEVMEDVTKSIVFELHPNYRNVHQKIYVRIANLPVYEQIRNISRQINLNTMIRIGGVVTRRSGVLPQLYQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGTVPAGRLPRYKQVILLNDLTDCARPGEEIEVTGVYINNFDLSLNTKNGFPVFATVVEANYVTKKEDHLSSYKLTQEDIEEIENLARDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKYRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLDGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKNVVDPVTDEMLATFVVDSHFKSQPKGAKQDDKSFIESQDVHASAMPTDPEILPQELLKKYITYAKLNIFPKLVNVNTYKNKVQEIYAELRTKSSHGQGVPIAVRHIESIIRMSEAHARMHLRRQVTEDDVNMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNDLLLFILGNLVQNALHFEEIITGSVSGLTYVDVKVDDLYNKAQEHEIYDLTTFFKSSQFSRANFVLDEERRVIRHYLA | 947 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo4g00470 | 947 | MobiDBLite | consensus disorder prediction | 140 | 207 | - | - | |
| Pumo4g00470 | 947 | Pfam | Mini-chromosome maintenance protein 2 | 38 | 164 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00470 | 947 | Pfam | MCM OB domain | 330 | 457 | IPR033762 | - | |
| Pumo4g00470 | 947 | MobiDBLite | consensus disorder prediction | 140 | 158 | - | - | |
| Pumo4g00470 | 947 | Pfam | MCM N-terminal domain | 230 | 323 | IPR027925 | - | |
| Pumo4g00470 | 947 | Pfam | MCM AAA-lid domain | 756 | 842 | IPR041562 | - | |
| Pumo4g00470 | 947 | Gene3D | - | 490 | 865 | IPR027417 | - | |
| Pumo4g00470 | 947 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Pumo4g00470 | 947 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 663 | 675 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00470 | 947 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 611 | 625 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00470 | 947 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 690 | 698 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00470 | 947 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 551 | 566 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00470 | 947 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 639 | 652 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00470 | 947 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 398 | 412 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00470 | 947 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 459 | 470 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00470 | 947 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 363 | 375 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00470 | 947 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 340 | 357 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00470 | 947 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 474 | 485 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo4g00470 | 947 | FunFam | DNA helicase | 490 | 865 | - | - | |
| Pumo4g00470 | 947 | Gene3D | - | 336 | 455 | IPR012340 | - | |
| Pumo4g00470 | 947 | Gene3D | - | 358 | 408 | - | - | |
| Pumo4g00470 | 947 | MobiDBLite | consensus disorder prediction | 86 | 128 | - | - | |
| Pumo4g00470 | 947 | CDD | MCM2 | 513 | 841 | - | - | |
| Pumo4g00470 | 947 | FunFam | DNA helicase | 358 | 408 | - | - | |
| Pumo4g00470 | 947 | FunFam | DNA helicase | 222 | 326 | - | - | |
| Pumo4g00470 | 947 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 217 | 887 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00470 | 947 | ProSitePatterns | MCM family signature. | 619 | 627 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pumo4g00470 | 947 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
| Pumo4g00470 | 947 | SUPERFAMILY | Nucleic acid-binding proteins | 232 | 479 | IPR012340 | - | |
| Pumo4g00470 | 947 | MobiDBLite | consensus disorder prediction | 99 | 121 | - | - | |
| Pumo4g00470 | 947 | MobiDBLite | consensus disorder prediction | 182 | 207 | - | - | |
| Pumo4g00470 | 947 | MobiDBLite | consensus disorder prediction | 160 | 181 | - | - | |
| Pumo4g00470 | 947 | Pfam | MCM P-loop domain | 497 | 720 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00470 | 947 | SMART | mcm | 326 | 843 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo4g00470 | 947 | Gene3D | - | 222 | 326 | - | - | |
| Pumo4g00470 | 947 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 520 | 845 | IPR027417 | - | |
| Pumo4g00470 | 947 | ProSiteProfiles | MCM family domain profile. | 510 | 716 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo4g00470 | Pumo-Chr4 | 6233736 | 6238798 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo4g00470 | 20 | 943 | Core DNA Replication Machinery Family | AT1G44900 | 71.183 | 0.0 | 1284 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo4g00470 | K02540 | - | gmx:100813006 | 1540.01 |