Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00468 ATGGAATCAGCAAGTTCTTCTTCAACTACCAATACTAAATCGCCAAACTCTTCTTCCGCTGGTTTCATTACGGATCAGCTTCCTCACACCTCCGAAGACGACGAGGCTTCCGTGGATCAAGATATCATACAAGGCGATCAAGAAGAACAATCTGGCGAGCAAGAACATGGAGAGGATCACAATTCTATGGAAGATTTTGGTGAGTACACCGAGGATCGAAGTGATGATATCATGGAGGATCGAAGCGCTGCACTGGACGCTAGCGATGATGCAATGCAACGTTCACCTGTAGGGTCACAACGAGGGCACTCAGGGGAGGATGTTCCTATGACCGATGAAACCGAGGATGATCAACATGATGATGAAGTTGAAGATGAAGATGAAGCTTTAGCTGAGTACAATATGTATCATATTAAAGGAACACTTAAAGAGTGGGTTACAAGAGATGAAGTGCGCTTTTTCATAGCCGAGAAATTCAAGGAATTCTTAAAGAGATATGTTAATCCAAAAAAAGAACATCGTGGCAAGAATAATATGTGTCTGATAAATGAGATGGTGTCGGCTAGTAAATGCAGTTTGGAGTTAGATTATAAAGAATTTCTCGTTCTTCATCCCAACATTGCCATTTGGCTGGCTGATGCGCCTCAGTCTGTCTTAGAAGTAATTGAAGAAGCTACCGAAAGCTTTGTCTTTGAATTACATCCAAATTACAGAAATGTACACCAAAAGATTTATCTACGCATAACCGAGTTTCCAATTCATGATGAGATTCGAAATCTAAGGCAGAAACACTTGAATACAATAATCCGAATTGGGGGAGTAGTAACCAGACGCACCGGAGTTTTGCCCCAGTTGGATCAGGTGAAGTACGACTGTAACAAATGTGGGGCAATTTTGGGACCTTTTTTCCAGAGTCGCCATTCAGAGGTGAAAGTTGGATCCTGTCCCGAGTGTCGATCAAAAGGACCGTTCACCACCAATATTGAACAGACAATTTATAGGAATTTTCAGGAGCTTGTTCTGCAAGAGACCCCAGGAACGGTTCCTGCTGGTAGATGTCCAAGATTCATGAAAGTGATTTTGTTGAATGACCTAATTGACATTGCTCGTCCTGGAGAAGAAATTGATGTTACAGGTGTTTATACTGGTAACTTTGACTCATCCCTAAACAAAAAAAATGGGTTCCCACTCTTTGCCACCTTTATTGAAGCAAACAATGTTACCAAAAAGCAAGACCACCTGTCCTCTTGCACACTTTCACAGGAGGACATGGAAGATATTGAAAATTTAGCTAAAGACCCTCAGATCTTTAAAAGGATTATTAAGTCCATTGCTCCGTCGATTTACGGACATGATGACATAAAGACCGCAATAGCATTAGCTATGCTTGGGGGACCAGAAAAAGTCATGGAAGGAAACCTTCGAGTGCGCGGAGACATAAACGTCCTTCTTCTCGGTGATCCAGGAACTGCAAAGTCTCAGTTCCTCAAGTACGTTGAGAAAACTGTGCAGAGAGCTTTATACACTAATGGCAAAGGGGCTTCTAATGTACTTACTGCTACAGCTCAGAAGGATCCATTCACAAGGGAGTGGGCTATTGTTGGGGGAGCCCTAGTTCTAGCTAACAAAGGAATTTGTCTTATTGATGAGTTTGACGAGATGAATGACCATAATAGGAGAAAGAGAAGAAGTAATAAATTATCCTTGACCAGTAAGTTACATATATTTTTCGTCACCAGGGCAAGTATTGATGAAGCGCTGGAGCAGCAGAGTGTAAGCATATCAAAAGCAGGAATTCTTACATCTCTTCAGGCACGCTGTTCTGTTATTGCAGCTGCCAGTCCTATTGGAGGAAGATATGATTCCGTAAAAACATTTTCTGAAAATGTTAAATTGACAGATTCTACTGTTGCTCGTTTTGACATCATCTGTGTTGTGAAGGATGAAGTTGATTCGAACTCTGATGAAATGCTTGCGACATTTGTGGTTGACAGTCACTTCAGGTCACAACCCAGGGGTGCTGACATAGATGTCCTTGCATCTGCCGTGTCAGATGATCCAGAGATACTTCCTCAAGAGCTACTGAAGAAGTACATTACATATGCCAAGTTGAAAATTTTTCCGAGGAATCATGTCACAGAAGAAGATGTGGACATGGCAATTCGAGTTCTACTTGAATCATTCATTTCCACCCAAAGATTTGGGGTGCAGACATTTCTTCAAAGGGAATATAAAAACATTCTGAATCTGCCTTAA 2256 0.4162 MESASSSSTTNTKSPNSSSAGFITDQLPHTSEDDEASVDQDIIQGDQEEQSGEQEHGEDHNSMEDFGEYTEDRSDDIMEDRSAALDASDDAMQRSPVGSQRGHSGEDVPMTDETEDDQHDDEVEDEDEALAEYNMYHIKGTLKEWVTRDEVRFFIAEKFKEFLKRYVNPKKEHRGKNNMCLINEMVSASKCSLELDYKEFLVLHPNIAIWLADAPQSVLEVIEEATESFVFELHPNYRNVHQKIYLRITEFPIHDEIRNLRQKHLNTIIRIGGVVTRRTGVLPQLDQVKYDCNKCGAILGPFFQSRHSEVKVGSCPECRSKGPFTTNIEQTIYRNFQELVLQETPGTVPAGRCPRFMKVILLNDLIDIARPGEEIDVTGVYTGNFDSSLNKKNGFPLFATFIEANNVTKKQDHLSSCTLSQEDMEDIENLAKDPQIFKRIIKSIAPSIYGHDDIKTAIALAMLGGPEKVMEGNLRVRGDINVLLLGDPGTAKSQFLKYVEKTVQRALYTNGKGASNVLTATAQKDPFTREWAIVGGALVLANKGICLIDEFDEMNDHNRRKRRSNKLSLTSKLHIFFVTRASIDEALEQQSVSISKAGILTSLQARCSVIAAASPIGGRYDSVKTFSENVKLTDSTVARFDIICVVKDEVDSNSDEMLATFVVDSHFRSQPRGADIDVLASAVSDDPEILPQELLKKYITYAKLKIFPRNHVTEEDVDMAIRVLLESFISTQRFGVQTFLQREYKNILNLP 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00468 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 734 IPR027417 -
Pumo4g00468 751 Pfam MCM OB domain 257 382 IPR033762 -
Pumo4g00468 751 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 132 709 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo4g00468 751 Pfam MCM P-loop domain 423 560 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00468 751 Pfam MCM P-loop domain 580 666 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00468 751 MobiDBLite consensus disorder prediction 110 126 - -
Pumo4g00468 751 Gene3D - 284 334 - -
Pumo4g00468 751 SUPERFAMILY Nucleic acid-binding proteins 158 405 IPR012340 -
Pumo4g00468 751 ProSiteProfiles MCM family domain profile. 436 662 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00468 751 MobiDBLite consensus disorder prediction 49 87 - -
Pumo4g00468 751 Gene3D - 417 711 IPR027417 -
Pumo4g00468 751 MobiDBLite consensus disorder prediction 1 26 - -
Pumo4g00468 751 PRINTS Mini-chromosome maintenance (MCM) protein family signature 636 644 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00468 751 PRINTS Mini-chromosome maintenance (MCM) protein family signature 477 492 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00468 751 PRINTS Mini-chromosome maintenance (MCM) protein family signature 585 598 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00468 751 PRINTS Mini-chromosome maintenance (MCM) protein family signature 609 621 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo4g00468 751 Gene3D - 257 382 IPR012340 -
Pumo4g00468 751 Gene3D - 149 253 - -
Pumo4g00468 751 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 400 411 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Pumo4g00468 751 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 266 283 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Pumo4g00468 751 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 385 396 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Pumo4g00468 751 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 289 301 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Pumo4g00468 751 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 324 338 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Pumo4g00468 751 SMART mcm 253 729 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo4g00468 751 FunFam DNA helicase 149 253 - -
Pumo4g00468 751 FunFam DNA helicase 284 334 - -
Pumo4g00468 751 MobiDBLite consensus disorder prediction 1 126 - -
Pumo4g00468 751 ProSitePatterns MCM family signature. 544 552 IPR018525 GO:0003677|GO:0005524|GO:0006260
Pumo4g00468 751 Pfam MCM N-terminal domain 157 248 IPR027925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00468 Pumo-Chr4 6176657 6192849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00468 99 748 Core DNA Replication Machinery Family AT1G44900 61.810 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00468 K02540 - gmx:100799441 924.08