Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00466 ATGCTCAGCGAAAATTCTCCCCAAGACACGAAACTGAAGAAGGTGTTTGTCCCAACCCAACTATCAATTTTGGTGTTTTTCAAAAAGGAAAAAAGGGAAGGCATTGAAATTGAAAATAACATCAGCAAACAGAGTGTTCCCCACACCATCCTCTCCCCACAAGAGAATGAGCCCGTTCATGTTCCTCTACCACCGAACACACCCCGCCACCACCTCTCGCTAACGTGCGCATCTTCCTTACCCTGCGCCTCGGGCACCCCTTTTTTTTCCCCTTATTCCCCTTCCTTCATAAGCTCCTTGTTAACCGTTCTCTCTCTCTTCCCTCCCCACTCAGATTCGGAGGATCGGAGCGAGGTTGGCGGTTCCGGCGTTGGGGGCGTTAGGGTTAGGGTTTCCGAGAGATGTGGTATGCTCCAGGCATTGATGAATCTGTTCTCGCTGTGTTGGAAGCCGTTTGGCCGCGATGCTGATCGAATCGATTCCATCGGAGTTATCGGAAGAGAAGGCAAAGACGGCTTGCTCTGGTTCCGCGACGTCGGAAAATATGGCTCCGGCGATTTCTCCATGGCCGTCGTTCAGGCCAACCAGGTTCTCGAAGACCAGAGCCAGATCGAGTCCGGTCCTCTCGGCACCTTCGTTGGCATATACGACGGTCACGGAGGACCCGACACCTCCAGATACGTTTGCGATCACTTGTTTCGCCATTTTCAAGCATTATCGGCTGAGTCACGCGGGGTTGTGACACCTGAGACAATTGAAAGGGCGTTTCGCCAAACAGAAGAGGGGTACACGGCCCTCGTGTCAGGCTTGTGGAATGCTAGACCTCAAATTGCAAGTGCTGGGACCTGTTGTCTAGTTGGAGTGATATTTCAGCAGACACTCTTTGTGGCAAACGCCGGAGATTCCCGTGTTGTATTGGGTAAGAAAGTTGGCAACACTGGAGGTATGGCTGCAATTCAGCTGTCTACAGAACACAATGCAAATCTTGAGGCTGTTAGACAGGAACTTAAAGAATTACACCCTCATGATCCCCAAATTGTTGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTGTATTTGAAGCATGCTCAGTTTAACCGGGAACCACTTAATGCAAAATTCAGACTTCCTGAACCGATGAACATGCCCATCTTGAGTGCTAATCCCACTATTCTTTCTCATGCTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACTTGAGTAATGAGAAAGCTGTGGATATTGTAAACAGCAATCCACATGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCTCTCCACGAAGCAGCAAGAAAACGAGAAATGCGATATTCAGACCTGCGTAAGATTGACAAGAAGGTTCGACGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTAAATCACGACCTTATTTCCAGAGGCACAGTGCTAGACCCGGCACTTTCAATTCGAAGCGCTCTCGATCACTGA 1533 0.4821 MLSENSPQDTKLKKVFVPTQLSILVFFKKEKREGIEIENNISKQSVPHTILSPQENEPVHVPLPPNTPRHHLSLTCASSLPCASGTPFFSPYSPSFISSLLTVLSLFPPHSDSEDRSEVGGSGVGGVRVRVSERCGMLQALMNLFSLCWKPFGRDADRIDSIGVIGREGKDGLLWFRDVGKYGSGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDTSRYVCDHLFRHFQALSAESRGVVTPETIERAFRQTEEGYTALVSGLWNARPQIASAGTCCLVGVIFQQTLFVANAGDSRVVLGKKVGNTGGMAAIQLSTEHNANLEAVRQELKELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYLKHAQFNREPLNAKFRLPEPMNMPILSANPTILSHALQPNDSFLIFASDGLWEHLSNEKAVDIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISRGTVLDPALSIRSALDH 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00466 510 FunFam Probable protein phosphatase 2C 42 177 495 - -
Pumo4g00466 510 ProSiteProfiles PPM-type phosphatase domain profile. 186 487 IPR001932 -
Pumo4g00466 510 CDD PP2Cc 187 487 IPR001932 -
Pumo4g00466 510 ProSitePatterns PPM-type phosphatase domain signature. 212 220 IPR000222 GO:0043169
Pumo4g00466 510 Gene3D - 178 495 IPR036457 -
Pumo4g00466 510 PANTHER PROTEIN PHOSPHATASE 150 485 IPR015655 GO:0004722|GO:0006470
Pumo4g00466 510 SUPERFAMILY PP2C-like 196 488 IPR036457 -
Pumo4g00466 510 Pfam Protein phosphatase 2C 210 457 IPR001932 -
Pumo4g00466 510 SMART PP2C_4 173 485 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00466 Pumo-Chr4 6107681 6112161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00466 137 507 PP2C-type Phosphatase Gene Family AT4G38520 59.055 7.37e-158 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00466 K01102 - gmx:100790813 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00466 4 6107681 6112161 Pumo4g00466 4 6107681 6112161 ECH
Pumo4g00466 4 6107681 6112161 Pumo2g00090 2 1864968 1870580 PCT