Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00454 ATGGGAAGTCCACCAACGGATGAGCTCATGAAGAAGATCCAACAGCTTGAGGAAGGACACGCGCACCTGAAGCAAGAAATGTCGAAACTGAAACTCTCCGATGTGAGACACGGCCACCATCGCCAGAGGTCGCACTCCGTGTCTCCGCAGCGTTCCAGATTAGGTGCTCCGCCGAAGAAAAGAAGCGATGCACCGGCTGCGTGGAAGAGAGGCTCTTGTTCTTTTAAACAATCGTCGCCGCTGCAGAGGGAGAGTCGCGGCGGCGGCGATCCTCAAATTCACGACGGAGGAGGAGGAGAAGCTGCTCCGCGCCGTGGTCCTTCCGCCGTCAATTTCACGGAACGGCAGTATCTTAATATTTTGCAGTCAATGGGACAGTCTGTTCATATATTGGATCTTAACTGTCGGATAATATACTGGAACCGTAGTGCGGAAAATCTATATGGTTATACAGCAGAGGAAGCTTTAGGACAGGATGGGATTGAGCTACTTGTAGACCCTAGGGATTTTGCCTTGGCCAATGATACAATGAACCGTGTTATGATGGGAGAGAGCTGGACTGGGCAATTTCCGGTCAAGAATAAGATGGGGGAGAAGTTTTTAGCTGTAGTGACTAATACACCTTTCTACGATGACGATGGAAGCTTAGTTGGGCTAATTTGTGTCTCTAGTGATTCACGGCCCTTTCTTGAAATGAGAGTTCCAATGCCTAGTGTAAGGAACACGGAGTCAGATTCAGATTCAGGTGGAACCCGACCTAGAAGTAGCATTACAAATAAACTTGGCATTGACACTCAACAGCCGCTTCAAGCTGCTATTGCTTCGAAAATTTCAAATTTGGCATCAAAGGTGAGTAACAAAGTTAAGTCAAGGATCTGGACGGGAGAAAACAATGTGGATCGTGAAGGTGGGAGTGGTGAAAGTCATCATTCTGAGCATAGTTTGTCGGAATCTGTTTTTTTGGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCTAGAGGTGATGTGCCACCATCCCATTTTGGTGCGTTTTCTCATGTCGAAGAAAAATCCCTGGGAAAAGCTCTGAGAGAGTCTGGTGATGAGAGTGACGGAAAATCTATTCACAAAATCATACCTAAGGCTGAAGCCTGGATTCAAAGGAAAACATTATCATGGCCATGGAGAACAAAGGATCAAGATGGATCAGAGGCAGGGAATGTTCGTGTTGCTGGCCCCTGGAGACAGAATGATCATGAAAATGAATCAGTTAATCAGAAGATTCTTTCTTCTGGCTTGAAGCAAGAAAGCCAGGCAGGTGAAAGTAATCGCCCTAATAACAATGAGGCTTCAGGATCCTGGTCCTCCTTTAATGTTAACAGCACAAGTAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTCTATCATGCTCTGTGGTATGGATCAGATGTTGCCGTCAAAGTTTTCTCAAAGCAAGAATATTCAGACGATGTGATACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGACACCCAAATATTCTTCTCTTCATGGGGGCCGTGACTTCACCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGCCGCTTGTTACACAGAAACACATCTAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGCGTAAATTATCTTCATCATTCTAACCCACCTATCATCCACAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGTATGAAACATATCTCACAACTAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCGGAAGTTCTTCGTAATGAACCCTCCGATGAGAAATCTGACGTTTACAGCTTTGGAGTAATATTATGGGAAATTGCAACTGAAAAGATACCTTGGGATAATCTCAACTCAATGCAGGTATTGCTTTCATGTGTAGATGAACCTTTGAAGATAGGCTTAAATATGTTTTTTGTCCCTCAAATTTGGGTCTGTCTTTTTTAG 2175 0.4524 MGSPPTDELMKKIQQLEEGHAHLKQEMSKLKLSDVRHGHHRQRSHSVSPQRSRLGAPPKKRSDAPAAWKRGSCSFKQSSPLQRESRGGGDPQIHDGGGGEAAPRRGPSAVNFTERQYLNILQSMGQSVHILDLNCRIIYWNRSAENLYGYTAEEALGQDGIELLVDPRDFALANDTMNRVMMGESWTGQFPVKNKMGEKFLAVVTNTPFYDDDGSLVGLICVSSDSRPFLEMRVPMPSVRNTESDSDSGGTRPRSSITNKLGIDTQQPLQAAIASKISNLASKVSNKVKSRIWTGENNVDREGGSGESHHSEHSLSESVFLDQREDANSSGASTPRGDVPPSHFGAFSHVEEKSLGKALRESGDESDGKSIHKIIPKAEAWIQRKTLSWPWRTKDQDGSEAGNVRVAGPWRQNDHENESVNQKILSSGLKQESQAGESNRPNNNEASGSWSSFNVNSTSSASSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHSNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKYETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWEIATEKIPWDNLNSMQVLLSCVDEPLKIGLNMFFVPQIWVCLF 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00454 724 Gene3D PAS domain 125 228 - -
Pumo4g00454 724 MobiDBLite consensus disorder prediction 392 451 - -
Pumo4g00454 724 Pfam PAS domain 129 225 IPR000014 -
Pumo4g00454 724 Pfam Protein tyrosine and serine/threonine kinase 492 699 IPR001245 GO:0004672|GO:0006468
Pumo4g00454 724 SUPERFAMILY Protein kinase-like (PK-like) 481 710 IPR011009 -
Pumo4g00454 724 MobiDBLite consensus disorder prediction 31 107 - -
Pumo4g00454 724 Gene3D Phosphorylase Kinase; domain 1 485 569 - -
Pumo4g00454 724 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 241 699 - -
Pumo4g00454 724 NCBIfam PAS domain S-box protein 114 224 IPR000014 -
Pumo4g00454 724 FunFam PAS domain-containing protein tyrosine kinase family protein 570 719 - -
Pumo4g00454 724 MobiDBLite consensus disorder prediction 239 263 - -
Pumo4g00454 724 MobiDBLite consensus disorder prediction 321 336 - -
Pumo4g00454 724 SUPERFAMILY PYP-like sensor domain (PAS domain) 113 225 IPR035965 -
Pumo4g00454 724 MobiDBLite consensus disorder prediction 302 320 - -
Pumo4g00454 724 ProSiteProfiles PAS repeat profile. 113 184 IPR000014 -
Pumo4g00454 724 Coils Coil 6 33 - -
Pumo4g00454 724 CDD PAS 124 225 IPR000014 -
Pumo4g00454 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Pumo4g00454 724 ProSiteProfiles Protein kinase domain profile. 492 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00454 724 MobiDBLite consensus disorder prediction 295 346 - -
Pumo4g00454 724 FunFam PAS domain-containing protein tyrosine kinase 485 569 - -
Pumo4g00454 724 SMART pas_2 115 182 IPR000014 -
Pumo4g00454 724 SMART serkin_6 492 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g00454 724 Gene3D Transferase(Phosphotransferase) domain 1 571 720 - -
Pumo4g00454 724 MobiDBLite consensus disorder prediction 419 451 - -
Pumo4g00454 724 CDD STKc_MAP3K-like 498 707 - -
Pumo4g00454 724 MobiDBLite consensus disorder prediction 233 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00454 Pumo-Chr4 5997620 6005671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00454 1 709 MAP Kinase Kinase Kinase AT3G06620 57.692 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Pumo4g00454 PK_Tyr_Ser-Thr 6.1e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00454 - - gmx:100800867 1284.63