Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00430 ATGGCCAATAACTTGGCGGCGCAACTGGTCGGTTCAGAGATACATGGATTCCACACATTGCAAGATTTGGATGTGGGGAGCATTATGGAGGAAGCAAGAACCAGATGGCTCCGTCCCAATGAGATTCATGCCATGCTTTGTAATTACAAGTATTTTACCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGTGGTACTATTGTCTTATTTGATCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACCGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGCCAGGATAACCCAAATTTTGTCCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTACCGTGAAACACAGGAGATGCAAGGTTCTCCTGTCACTCCTGTAAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCATGGATTTTATCAGAAGAAATAGATTCAGGAACCACAACTGCATATGCTGGTGACATGAGCCACAATATAAATGTCAAAAGTCATGAACTGAGACTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGATGCAAATGATCATAATACCTCTACTGTGCCTAATGGAGGTGCTGTTCCATATTTTGATCAACAAGATCAAATTTTACTGAATGGCAGTTTCAGCAATGTAGCCAACAATCTATCTGCAGAAATTCCTTCTTTTGATAGTCTTACTCAGCCAATTGCTGGGAGCAACAGTGTTCCTTACAATTTTTCAGAAAGTGTTAATCTTCAGACAATGGACAATCAAGCAAATCCAAATGAGCAGAGGAATAATGCTGTTTCTTTAAGTGGTGTTGATTCCTTGGACACTTTGGTCAATGATAGATTGCAAAGTCAGCACAGCTTTGGAATGTGGGTGAACCACATCATGTCCGATTCACCGTGTTCAGTAGATGACCCAGCTCTGGAATCACCAGTTTCATCTGTTCATGAACCATATTCGTCTCTGGTAGTGGATAGTCAGCAATCTTCTCTGCCAGAACAAGTATTTACTATCACTGATGTATCCCCTACATGGGTATCTTCCACTGAGAAATCAAAGGTCCTGGTGACTGGATTTTTTCGTAAGGACTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGTGTTCCTGCAGAAATTGTTCAGGTTGGGGTCTACCGGTGCTGGGTATCACCACATTCTCCAGGATTCGTGAATCTCTACTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCCTGTTTTGCATGATCCTGCAGTTTCAATGGAAGAGAATGACAATTGGGATGAGTTTCGATTACAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAATTGAGCCTTGATGTTATCTCCAGTAAAGTATCACATAATAGACTTAAGGAGGCTAGGCAATTCGCCCTCAAAACATCATTTATTTCCAATAGTTGGCAATACTTAATCAAGTCAACTGAAGACAACCAAATTCCATTTTCACAAGCAAAAGATGCTCTATTCGGAATTGCATTGAAAAACAGACTAAAGGAATGGCTTTTGGAAAGAATTGTTTTAGGCTGCAAGACTACTGAATATGATGCTCATGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGAATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCACTGGATTTCCGTGATAGGTTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGAGCAAAGCCAAATTTGGTCACTGATCCTACTCCACAAAATCCTGGTGGATGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTCAGCACTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCGCTGGAAACTAGCACGACTGATCCAGTAAATTCTGCAAACCTTACTGAGGACCAGCAGAACCTGAAGGATACATTGGCAGCTTACCGAACCGCTGCTGAGGCAGCTTCCCGCATACATGCCGCATTTAGGGAACACTCTCTAAAACTGAGAACTAAGGCGGTTGCATCTTCCAATCCAGAGGCTCAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTTAGGAACTTCGAGACAAAGAAAATGATGGCAGCTGCTGCTCGCATTCAGTGTACATTCCGTACATGGAAGATTCGTAAAGAATTTCTCAACATGCGTCGTCAGGCTGTTAAAATTCAATCTGCGTTCCGGTGCTTTCAAGTGCGGAAGCATTATCGCAAAATTCTTTGGTCTGTTGGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTCTGAAGAGAAGGGGCTTCCGTGGGCTCCAGGTCAAAACTGTCGAAGCAGGAACCGGAGATCAGGATCAGCAAAGTGATGTAGAGGAGGAATTCTTTCGGACTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCTGTAGTACGTGTGCAGGCTATGTTCCGTTCAAAGAAAGCACAAGAAGAGTACAGGAGGATGAAATTGGCCCTTAATCAAGCAAAGCTGGATCGGGAATACGAACAACTTCTTAGTACTGAAGTTGACATGGAACTGAAGACATAG 2772 0.4224 MANNLAAQLVGSEIHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSMEHIVLVHYRETQEMQGSPVTPVNSHSSSVSDPPAPWILSEEIDSGTTTAYAGDMSHNINVKSHELRLHEINTLEWDDLVDANDHNTSTVPNGGAVPYFDQQDQILLNGSFSNVANNLSAEIPSFDSLTQPIAGSNSVPYNFSESVNLQTMDNQANPNEQRNNAVSLSGVDSLDTLVNDRLQSQHSFGMWVNHIMSDSPCSVDDPALESPVSSVHEPYSSLVVDSQQSSLPEQVFTITDVSPTWVSSTEKSKVLVTGFFRKDYMHLSKSNLLCVCGDVSVPAEIVQVGVYRCWVSPHSPGFVNLYLSFDGHKPISQVVNFEYRTPVLHDPAVSMEENDNWDEFRLQMRLAYLLFAKQLSLDVISSKVSHNRLKEARQFALKTSFISNSWQYLIKSTEDNQIPFSQAKDALFGIALKNRLKEWLLERIVLGCKTTEYDAHGQSVIHLCAILEYTWAVSLFSWSGLSLDFRDRFGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADLAYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDPVNSANLTEDQQNLKDTLAAYRTAAEAASRIHAAFREHSLKLRTKAVASSNPEAQARKIVAAMKIQHAFRNFETKKMMAAAARIQCTFRTWKIRKEFLNMRRQAVKIQSAFRCFQVRKHYRKILWSVGVVEKAVLRWRLKRRGFRGLQVKTVEAGTGDQDQQSDVEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALNQAKLDREYEQLLSTEVDMELKT 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00430 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 819 IPR027417 -
Pumo4g00430 923 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Pumo4g00430 923 Gene3D Immunoglobulins 364 459 IPR013783 -
Pumo4g00430 923 SMART iq_5 872 894 IPR000048 GO:0005515
Pumo4g00430 923 SMART iq_5 791 813 IPR000048 GO:0005515
Pumo4g00430 923 SMART iq_5 768 790 IPR000048 GO:0005515
Pumo4g00430 923 FunFam Calmodulin-binding transcription activator 5 364 460 - -
Pumo4g00430 923 Gene3D - 534 675 IPR036770 -
Pumo4g00430 923 SUPERFAMILY E set domains 369 456 IPR014756 -
Pumo4g00430 923 ProSiteProfiles IQ motif profile. 792 816 IPR000048 GO:0005515
Pumo4g00430 923 SUPERFAMILY Ankyrin repeat 548 669 IPR036770 -
Pumo4g00430 923 FunFam calmodulin-binding transcription activator 5 535 675 - -
Pumo4g00430 923 SMART ANK_2a 644 673 IPR002110 GO:0005515
Pumo4g00430 923 SMART ANK_2a 605 634 IPR002110 GO:0005515
Pumo4g00430 923 Pfam Ankyrin repeats (3 copies) 554 634 IPR002110 GO:0005515
Pumo4g00430 923 Gene3D - 766 816 - -
Pumo4g00430 923 ProSiteProfiles IQ motif profile. 874 902 IPR000048 GO:0005515
Pumo4g00430 923 SMART CG_1_2 28 146 IPR005559 GO:0003677
Pumo4g00430 923 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Pumo4g00430 923 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 900 - -
Pumo4g00430 923 Pfam IQ calmodulin-binding motif 771 789 IPR000048 GO:0005515
Pumo4g00430 923 Pfam IQ calmodulin-binding motif 794 813 IPR000048 GO:0005515
Pumo4g00430 923 ProSiteProfiles IQ motif profile. 769 798 IPR000048 GO:0005515
Pumo4g00430 923 Coils Coil 886 906 - -
Pumo4g00430 923 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Pumo4g00430 923 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00430 Pumo-Chr4 5797701 5806794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00430 28 906 CAMTA Transcription Factor Family AT3G16940 55.102 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pumo4g00430 CG-1 1.8e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00430 K21596 - gmx:100793970 1775.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00430 4 5797701 5806794 Pumo4g00430 4 5797701 5806794 ECH
Pumo4g00430 4 5797701 5806794 Pumo2g01313 2 19230571 19238052 PCT