Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00421 ATGGGGAGAGCTCCTTGCTGTGAGAAGGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTGACCGATTACATCCAAGAAAATGGTGAGGGATCATGGAGGTCCTTGCCCAAGAATGCAGGTTTGTTAAGATGTGGGAAAAGTTGTAGACTGAGATGGATCAACTACTTGAGATCAGACGTGAAGAGAGGCAACATCACTCCTCAAGAAGAAGAGATCATTGTCAAGTTGCATGCTGTTCTCGGTAACAGGTGGTCTGTAATAGCAGGACATTTACCAGGTCGCACGGACAATGAAATAAAGAACTATTGGAATTCTCATTTGAGGAGAAAGATTTACTGCTTCATGAAGTCCTTAAATGAGTCCCTTCCTCCCATTGACATGGCTGCTGTAAACGTAGCTGCTACTTCCAAGAGAAGAACCGCTGGTCGAGGCTCAAAAACTCAACCAGCCATGCAAGAGGACAAAAACATGCCTAATGGCCAAAACTCCTCACAAAGTAACACAAGCGAAGTGACTCAAGTTCAACCAATGCTCAAAAGAAGTGCAACTTCACAAAGTTTCAATGATGAGGAGAACTTAACAGAATATAGTTTTGATGCTTATTGTGAGATGGGGGACAACATATATGGCACAGCTGCTTCATGCCCCAGCATGGATGAAGTTGAGGCCATGGGACCTTACGAATGGTTAGATGATGAAATCATGAAACTAAGTCACATGTTTGAAAATGGGATGCTCGTAAACCCAGGTGGGTTTGTAGCCAATAATGAAGAGTGGCTTAGTAGAAATGACTATGGACTAGTGGGAGAGGAGATAATGGGAGCAAATGAAGAGAGCAAGAATGGTGTTTGGAGCTCATCAAATGCAGAAAGTGGAGAGTGGAACACTAGCTGTTCCTCAGTGAATTCTGTTTATGACTATCATCAATGGCCTGATATGCATTTAGAAGGTAGTGTTCAATCCTATAATCCTTGGGATCTTTGTGAAGAAAACCAGAACGTGGCTTGCTTTTGGGGTACTAGCAATAATGATGGAAATGGCTTTTATCAGTGA 1068 0.4288 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDMAAVNVAATSKRRTAGRGSKTQPAMQEDKNMPNGQNSSQSNTSEVTQVQPMLKRSATSQSFNDEENLTEYSFDAYCEMGDNIYGTAASCPSMDEVEAMGPYEWLDDEIMKLSHMFENGMLVNPGGFVANNEEWLSRNDYGLVGEEIMGANEESKNGVWSSSNAESGEWNTSCSSVNSVYDYHQWPDMHLEGSVQSYNPWDLCEENQNVACFWGTSNNDGNGFYQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00421 355 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo4g00421 355 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo4g00421 355 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo4g00421 355 Gene3D - 71 116 - -
Pumo4g00421 355 CDD SANT 16 61 IPR001005 -
Pumo4g00421 355 MobiDBLite consensus disorder prediction 141 181 - -
Pumo4g00421 355 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo4g00421 355 FunFam Myb transcription factor 71 116 - -
Pumo4g00421 355 Gene3D - 13 66 - -
Pumo4g00421 355 MobiDBLite consensus disorder prediction 143 181 - -
Pumo4g00421 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo4g00421 355 SMART sant 66 114 IPR001005 -
Pumo4g00421 355 SMART sant 13 63 IPR001005 -
Pumo4g00421 355 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo4g00421 355 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 195 - -
Pumo4g00421 355 CDD SANT 71 112 IPR001005 -
Pumo4g00421 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo4g00421 355 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00421 Pumo-Chr4 5597890 5601176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00421 1 242 MYB Transcription Factor Family AT5G49330 53.719 1.52e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g00421 Myb_DNA-binding 4.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00421 K09422 - gmx:100795019 617.076