Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00416 ATGCTGAGAAATGCCACGTGGACATTATCAAACTTTTGTAGGGGTAAGCCACAGCCTCCGTTTGAGCAGGTGAGACCAGCACTTCCAGCACTTGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCATTATCATATCTCTCTGATGGCACAAATGACAAAATCCAAGCAGTTATTGAGGCTGGTGTATGTGCCAGATTGGTGCAGTTACTCATGCATCCATCTCCCTCAGTGCTGATTCCTGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGACATGCAGACTCAGTGTATTATCAATCATGGTGCGCTCCCTTGCCTTTTGAACCTGTTGACACAAAATCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACTATGTCAAACATTACTGCTGGAAATAAGGAACAAATCCAGGCTGTTATTGAAGCTGGTCTGGTTGCACCCCTTGTCAATCTTCTTCAAAATGCCGAGTTTGACATTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGAACTCATGATCAGATCAAGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTGTGTGATCTGCTTGTTTGCCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTAAAGGTTGGAGAAGCTGAGAAGAGCCTAAGTAACACTGGAGATGTTAACGTGTATGCACAGATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAACCTGCAGAGTCATGACAACAACGAAATATATGAAAAGGCTGTTAAAATTCTTGAAACATATTGGTTGGAAGAAGAAGATGAGACACTACCTTCAGGAGATGGTGCTCAACCTGGTTTCAATTTCGGAAACAATGAGCTTCCAGTCCCATCTGGTGGATTCAACTTCAGCTGA 942 0.4289 MLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLMHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTQNHKKSIKKEACWTMSNITAGNKEQIQAVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLSNTGDVNVYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGAQPGFNFGNNELPVPSGGFNFS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00416 313 Pfam Atypical Arm repeat 240 284 IPR032413 -
Pumo4g00416 313 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 26 68 IPR000225 GO:0005515
Pumo4g00416 313 MobiDBLite consensus disorder prediction 285 313 - -
Pumo4g00416 313 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 110 153 IPR000225 GO:0005515
Pumo4g00416 313 PANTHER IMPORTIN ALPHA 1 284 - -
Pumo4g00416 313 Gene3D - 1 279 IPR011989 -
Pumo4g00416 313 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 153 181 IPR000225 GO:0005515
Pumo4g00416 313 Pfam Armadillo/beta-catenin-like repeat 142 181 IPR000225 GO:0005515
Pumo4g00416 313 Pfam Armadillo/beta-catenin-like repeat 58 96 IPR000225 GO:0005515
Pumo4g00416 313 Pfam Armadillo/beta-catenin-like repeat 100 140 IPR000225 GO:0005515
Pumo4g00416 313 Pfam Armadillo/beta-catenin-like repeat 186 223 IPR000225 GO:0005515
Pumo4g00416 313 Pfam Armadillo/beta-catenin-like repeat 27 54 IPR000225 GO:0005515
Pumo4g00416 313 SMART arm_5 57 97 IPR000225 GO:0005515
Pumo4g00416 313 SMART arm_5 99 140 IPR000225 GO:0005515
Pumo4g00416 313 SMART arm_5 185 225 IPR000225 GO:0005515
Pumo4g00416 313 SMART arm_5 16 55 IPR000225 GO:0005515
Pumo4g00416 313 SMART arm_5 142 182 IPR000225 GO:0005515
Pumo4g00416 313 SUPERFAMILY ARM repeat 2 283 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00416 Pumo-Chr4 5536752 5539592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00416 106 247 U-box Gene Family AT3G54790 29.452 5.94e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00416 K15042 - gmx:100792804 623.239