Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00415 ATGGTGGATCCAACTGGAAAAGGATCGGAAGTTGAGGACTCAAACCCTAACGCTCCTTCCTCGGGGAACAGTCCGAGCAGCAACAATGAGCAGAAGAAGACCTGCGCCGATTGCGGCACCACCAAGACCCCTCTCTGGAGGGGTGGTCCTGCAGGACCTAAGGTCAGTTCCCTCTCCATTTCTCAGATCGCGCCACGTGGCCTTAAACCAGCCCTTGATCTCACACTCTGTTATCCGTTTTTTTTGCAGTCTCTGTGCAACGCGTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCCATTTTGGGGATAAGCAAGGCAAGCAGCGAAGACGGTAGAAAAGGAAAGAGGAGCAGCGGCGGCGGCGCTTTGGGGAGGGAAGTGTTGTTGCACCGATCGCATTGGAAGAAGCTCGGAGAGGAAGAAAAAGCTGCAGTGTTGTTGATGTCGCTCTCTTATGGATCCGTTTATGCCTGA 474 0.5359 MVDPTGKGSEVEDSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKVSSLSISQIAPRGLKPALDLTLCYPFFLQSLCNACGIRSRKKKRAILGISKASSEDGRKGKRSSGGGALGREVLLHRSHWKKLGEEEKAAVLLMSLSYGSVYA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00415 157 MobiDBLite consensus disorder prediction 10 38 - -
Pumo4g00415 157 Pfam GATA zinc finger 35 54 IPR000679 GO:0006355|GO:0043565
Pumo4g00415 157 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 29 53 - -
Pumo4g00415 157 ProSiteProfiles GATA-type zinc finger domain profile. 29 52 IPR000679 GO:0006355|GO:0043565
Pumo4g00415 157 PANTHER OS01G0976800 PROTEIN 9 157 - -
Pumo4g00415 157 CDD ZnF_GATA 34 98 IPR000679 GO:0006355|GO:0043565
Pumo4g00415 157 SMART GATA_3 29 109 IPR000679 GO:0006355|GO:0043565
Pumo4g00415 157 Gene3D - 26 100 IPR013088 GO:0006355|GO:0008270
Pumo4g00415 157 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00415 Pumo-Chr4 5529980 5530996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00415 26 157 C2C2-Gata Transcription Factor Family AT5G49300 45.578 1.47e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo4g00415 GATA 2.5e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00415 - - pvu:PHAVU_003G110400g 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00415 4 5529980 5530996 Pumo4g00415 4 5529980 5530996 ECH