Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00413 ATGCTCCTCCGAAGCCACTGTTGCTACCTCAGCATCATCGCTGCGCTAGCAATCTTCCTCGCAACGGCGTCGTTAGCCGACGCGCAATCCTGCAACGGCATCCTCGTCTCCTACGCCTACACCGGCGGCTTGCAGTTGCCGCCGAACGTCTCCGACGCCGCGAAGCAGCCGTACCGCTTCGAGTCGACGGTGACGGTGCTCAACAACGGCCTCGACGAGCTCAAGTCCTGGAAGGTCTTCGTTGGGTTCGACCACGACGAGTTGTTGGTCTCTGCCTCCAATGCTGTGCTCGCCGACGGCACCACCCTCCCCGCCGCAGTCGGAAACGGCACCGTCTTCGCCGGCTTCCCCATGACCGATCTCAAGACCGCCGTCGAAACCGCCGGCGACTTGACCCAGATGCAGGCTCAGATCAACCTCGTTGGCACCGTGTTCGGGGTGGCGCCGCCCAGTGTTCCCATGCCGAAATCCATCAACCTCGCCAATGATGGATTCCTCTGTCGCAAATCCACCGCTCAAGGGAAGAATGCGAGTAGTGTGTGTTGTACGAGAGATCCCAAGTTCAAAACTAACATTACCACGGATGAAGAGTTTTTGCCACGTCAGAATGGTGATCTTACCATTATGTATGATGTGATCAGAACTTATGATTCAAATTACTGGGCTGAGGTTACTATTGCAAACCATAACCCACTTGGGAGGCTTGACAACTGGAGGTTGAGCTGGGACTGGATGAATGATGAGTTTATATACTCAATGAAAGGGGCTTATCCTTCTGTTGTGGATGCTTCTGATTGTCTGTTTGGTAAACAAGGTACATTCTACAGGGATCTTGATTTTGCCAATGTGTTGAATTGTGAAAGAAGGCCAACCATAATTGATCTCCCTCCCACCAAGTTCAATGATTCTGACCTTGGGAAGATTCCCTTTTGCTGCCGGAATGGAACTATTTTGCCTCCGTCGATGGATCCTAGCATGTCAGCTTCAAGATTCCAAATGCAGATCTTCAAGATGCCGCCAACGCTTAACCGATCCCAGCTTTCACCGCCACAGAACTGGAAGATAAGTGGCACACTCAATCCTGACTATAAATGTGGCCCTCCTGTTAGAGTGAGTCCTAGCGAAAATCCTGATCCATCGGGCTTACCATCGAACAAAACTGTGATGGCCAGTTGGCAGGTTGTGTGCAACATAACAACAGCCAAGAGGACATCAAGTAAATGCTGTGTCTCGTTTTCAGCTTATTACAATGATTCAGTTATTCCTTGCAAAACATGTGCTTGTGGATGCCCCAAGAACACAGAGAGAACATGTAGCACTACTGCTCCAGCTATGTGGCTTCCACCAGAGGCACTTCTTGTTCCTTTTGAGAACCGAACTGCTAAGGCTGTTGCTTGGGCAAGTCTGAAACATCTACGGGTGCCAAACCCAATGCCGTGTAGCGATAACTGTGGTGTGAGCATCAACTGGCATTTGTACACAGACTACACTAAAGGATGGAGTGCAAGGGTGACACTTTTTAACTGGGGTGAGACTAATTTTGCAGACTGGTTTGCCGCGGTACAAATGGACAAAGCAGCTGCAGGTTTTGAGAAAATGTATTCATTCAATGCAACTCTTCTAGATGGTGTAAACAATACAATAATAATGCAAGGTTTGCCAGGTTTGAACTTCCTGGTAGCAGAAACAGATGCAGCTGACCCTCTGAGAGATCCTAGGGTGCCTGGTAAACAACAGTCAGTGATCTCATTCACAAAGAAAACTACTCCTGGAATCAATGTAGCTCGTGGAGATGGGTTTCCCACAAAGGTATTTTTCAATGGGGAAGAGTGCTCTCTTCCTTCGGTGTATCCAAGCAGTGGTTTCAGGAATGGTTTTTCATTGGCTACTTCCTTGCTTCTAACACTGTTGCTGATCCTCTTGATGCGGTAA 1932 0.4922 MLLRSHCCYLSIIAALAIFLATASLADAQSCNGILVSYAYTGGLQLPPNVSDAAKQPYRFESTVTVLNNGLDELKSWKVFVGFDHDELLVSASNAVLADGTTLPAAVGNGTVFAGFPMTDLKTAVETAGDLTQMQAQINLVGTVFGVAPPSVPMPKSINLANDGFLCRKSTAQGKNASSVCCTRDPKFKTNITTDEEFLPRQNGDLTIMYDVIRTYDSNYWAEVTIANHNPLGRLDNWRLSWDWMNDEFIYSMKGAYPSVVDASDCLFGKQGTFYRDLDFANVLNCERRPTIIDLPPTKFNDSDLGKIPFCCRNGTILPPSMDPSMSASRFQMQIFKMPPTLNRSQLSPPQNWKISGTLNPDYKCGPPVRVSPSENPDPSGLPSNKTVMASWQVVCNITTAKRTSSKCCVSFSAYYNDSVIPCKTCACGCPKNTERTCSTTAPAMWLPPEALLVPFENRTAKAVAWASLKHLRVPNPMPCSDNCGVSINWHLYTDYTKGWSARVTLFNWGETNFADWFAAVQMDKAAAGFEKMYSFNATLLDGVNNTIIMQGLPGLNFLVAETDAADPLRDPRVPGKQQSVISFTKKTTPGINVARGDGFPTKVFFNGEECSLPSVYPSSGFRNGFSLATSLLLTLLLILLMR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00413 643 PANTHER COBRA-LIKE PROTEIN 7 26 641 - -
Pumo4g00413 643 Pfam COBRA-like protein 220 399 IPR006918 GO:0010215|GO:0016020
Pumo4g00413 643 MobiDBLite consensus disorder prediction 366 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00413 Pumo-Chr4 5510130 5512699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00413 31 628 COBRA Gene Family AT4G16120 69.320 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00413 - - gmx:100803929 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00413 4 5510130 5512699 Pumo4g00413 4 5510130 5512699 ECH
Pumo4g00413 4 5510130 5512699 Pumo2g01326 2 19429792 19433331 PCT