Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00402 ATGGCTTCAACGGACGTCAGAGGCATTTTGACAGCTTTCAATCCTTCTCTCGACTTCTTCGCTATCACCGCCGGAGACGGTCGCGTCAAGATATGGGACACTCTGAGGGGTCAGGTCCACACCGAGTTCGCAGATATTACCTCAACTCATTCAACTACTACTTTACATCATAAATCCATAAACGGCCATCTTGCGCTAGATTATACTTGCATCAAGTGGTTATCCTTCGAAAAAAAGAGGAAAAGGAAGCATACATCCTCGTTGTTAGTGCTTGGAACTGGTGGCGGTGATGTTTTAGCACTTGATGTTGCTTCTGGTCAATTGAGTTGGAGAGTTACTGACTGTCATCCTGGAGGTGTGAGAGCCATTGCATCTTCAGCAAATGTGTCAAGCATTTATACGGCTGGTGCAGATGGGATGGTATATGTGATAGATTTCATGACAGGAAACCTGTTGGAAAAATTTAAAGCTTCTACAAAGGCAGTATCCTGCATGTCTGTTTCTCCAGATGGGAAGACATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAGTCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTTCGATGCATGGTATTCACCGAAGATGGGAAGTATATCCTCTCGTCTGCTGTTGGTGAAAGATATATTGCTGTTTGGAGGATAGATGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCGATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGTATTGATAGTGGGGAACATGATGAGGCTGGCATATGTGTTTTGGCAATCTCAGAAATTGGCATTTGTTATTTATGGTTTGGTAATAGTATTGAAGAACTGCGTAATGCAAAACCTACGAAAATATCATTATCTTTAGAAGACATGCCCTCCAGAAATTACAAGGGAGCTCTGCCAGCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCAGCCTCTGGGCAAGTTTTTCTTGTTTATGGGTTGCTTGTAAAACCATCATTTAGAAAAATTCTAGTGCATTCTGGTGCGGACATAAAGTTGAATGTCTCTCATGATGGTGTTCTTCTTCCAATGAGTCAATCTCTTGTCAAATCTAAAAAGGGGACAAATGCACAAACAGTTACTGCACTAGACCGAGCTAATGCTGAGGATGCCTTGCTTCCAATTCCTAAGGTTTTTGATTCTCATGAGAAAGAGAAAGCATTTAAAAAATCTCTGGACAAGGATGTAATTGATGATTTGCATAGAAGTAGTAAAGATGATTCTGTTGAGATAGAAGATGATATGGCCCAAAGTGAGATCGATGTAATTTGCATGGAGGACCGGCTGAGATCACTAGGGATGATTTCCAGTGAAAGTGACTATGCATCAAACATTGAACTTTGCTCTGCGTTGTTGAATGGTATTGTTCTGGAAGCTACTGTTCCAGTGAAAAAGATAAGAGCAGCTGTTTTGTCTATGGAGTCAAGCGAAGCATTCAAGCTACTGGAAGCGTTACTGGCTGCATGGCAATCAAGGTCATCTAGTGGAAAGTATATTCTTCCATGGATATACAGCATATTAGTGAATCATGGTCACAATGTCATCGCTCAGGAATCTGTGACACGTACACTCGATTCCTTAGACAAGATTACCAATTTTAGAGGGACAACTCATCAGCCTTTGTTACAATTATCAGGTCGTCTGCAACTGGTGACATCACAGATTGACAAGGCTTCTCAGACTATAAGCCATTCAGTACTTGAACTCCAAACGCAAGAAAGTGAAGATGAAGATGAAAATGAAGATGAATATTATCATGAGGAAGATGATGCTTCTGAAATAAGTACCGATGATGAAAGCTAG 1869 0.4125 MASTDVRGILTAFNPSLDFFAITAGDGRVKIWDTLRGQVHTEFADITSTHSTTTLHHKSINGHLALDYTCIKWLSFEKKRKRKHTSSLLVLGTGGGDVLALDVASGQLSWRVTDCHPGGVRAIASSANVSSIYTAGADGMVYVIDFMTGNLLEKFKASTKAVSCMSVSPDGKTLATAAAQLKIFNCSSHKKIQKFSGHPGSVRCMVFTEDGKYILSSAVGERYIAVWRIDGAKKQSASCVLAMEHPAVFLDSRCIDSGEHDEAGICVLAISEIGICYLWFGNSIEELRNAKPTKISLSLEDMPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVSHDGVLLPMSQSLVKSKKGTNAQTVTALDRANAEDALLPIPKVFDSHEKEKAFKKSLDKDVIDDLHRSSKDDSVEIEDDMAQSEIDVICMEDRLRSLGMISSESDYASNIELCSALLNGIVLEATVPVKKIRAAVLSMESSEAFKLLEALLAAWQSRSSSGKYILPWIYSILVNHGHNVIAQESVTRTLDSLDKITNFRGTTHQPLLQLSGRLQLVTSQIDKASQTISHSVLELQTQESEDEDENEDEYYHEEDDASEISTDDES 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00402 622 Gene3D - 159 300 IPR015943 GO:0005515
Pumo4g00402 622 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 231 IPR011047 -
Pumo4g00402 622 Pfam WD domain, G-beta repeat 191 227 IPR001680 GO:0005515
Pumo4g00402 622 Pfam WD domain, G-beta repeat 10 33 IPR001680 GO:0005515
Pumo4g00402 622 SMART WD40_4 105 145 IPR001680 GO:0005515
Pumo4g00402 622 SMART WD40_4 188 228 IPR001680 GO:0005515
Pumo4g00402 622 SMART WD40_4 3 33 IPR001680 GO:0005515
Pumo4g00402 622 SMART WD40_4 148 185 IPR001680 GO:0005515
Pumo4g00402 622 MobiDBLite consensus disorder prediction 589 622 - -
Pumo4g00402 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 237 IPR001680 GO:0005515
Pumo4g00402 622 Gene3D - 5 158 IPR015943 GO:0005515
Pumo4g00402 622 PANTHER OS03G0300300 PROTEIN 4 621 - -
Pumo4g00402 622 MobiDBLite consensus disorder prediction 594 622 - -
Pumo4g00402 622 Pfam Dip2/Utp12 Family 481 574 IPR007148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00402 Pumo-Chr4 5367576 5374839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00402 116 227 U-box Gene Family AT2G33340 28.448 2.56e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00402 K14546 - gmx:100815458 1080.09