Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00399 ATGGGGAGAATGGGACAAGAATCAGACTCCAAGACCAAGTTGGTATTAGAGATTTGCTCCATTTCCACGCGTTCTGTGGTCTGTGTTCATACACTTCTCTCAAAACCAGCCAGGGCAACTTTCGTTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAATGCCATTCGCAAGAGGTACCATAAACTGGCCTTACAAGTTCACCCAGATAAGAATAAACATCCCAAGGCTGAAATTGCTTTCAAGCTCGTTTCTGAGGCATATGCATGTCTATCTAATGTAGCAAATAGAAAAGCCTTTGACTTGGAGAGATGTAAGCATTTCTGCTTCGAGTGCAAAAGAATACCGTATACATCGAGCAATGTCCCTGGCAATTCAAGTGGGTCAGGTTTCAAGGCATGGAATATCATCACCAGATCAAGATCTTTTAAACTTTGGAGAAATATTAGGGACATGAGAGAAAGATTCATGGACGAGGCTAAGGTGATAGAGAACTGTTTGAGAACAAATTCAATGTCAAGGAAAGAATCCCCGCTCTACGATCCGGTAGGCTTTCTACATAGAAGCAAGTCACTGCATAGATATGAGAAAGAAACCCCAGTTTTCAATCCATCGGACTACTTGTACCAAGGCTACCCTCATCTGAGGAGCAATATTTACAAGAATACTTCAACATTTTGGTACTTGCAGAGAAATAGTATGCTTCACAATGAAAAGGGAGGAGCGCTGCACGCCTCCCCTGTTTTCGAGGTCAAATCAAGTAGTTTGTTTACTAGCAAATTCGCTTTTGTCCCATCAAAATGTTAG 816 0.4216 MGRMGQESDSKTKLVLEICSISTRSVVCVHTLLSKPARATFVDWYCILGVEENAGVNAIRKRYHKLALQVHPDKNKHPKAEIAFKLVSEAYACLSNVANRKAFDLERCKHFCFECKRIPYTSSNVPGNSSGSGFKAWNIITRSRSFKLWRNIRDMRERFMDEAKVIENCLRTNSMSRKESPLYDPVGFLHRSKSLHRYEKETPVFNPSDYLYQGYPHLRSNIYKNTSTFWYLQRNSMLHNEKGGALHASPVFEVKSSSLFTSKFAFVPSKC 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00399 271 FunFam Chaperone protein dnaJ 49 isoform A 42 165 - -
Pumo4g00399 271 CDD DnaJ 43 96 IPR001623 -
Pumo4g00399 271 ProSiteProfiles dnaJ domain profile. 43 107 IPR001623 -
Pumo4g00399 271 SUPERFAMILY Chaperone J-domain 35 106 IPR036869 -
Pumo4g00399 271 ProSitePatterns Nt-dnaJ domain signature. 84 103 IPR018253 -
Pumo4g00399 271 Gene3D DnaJ domain 42 166 IPR036869 -
Pumo4g00399 271 SMART dnaj_3 42 99 IPR001623 -
Pumo4g00399 271 PRINTS DnaJ domain signature 79 99 IPR001623 -
Pumo4g00399 271 PRINTS DnaJ domain signature 63 78 IPR001623 -
Pumo4g00399 271 PRINTS DnaJ domain signature 45 63 IPR001623 -
Pumo4g00399 271 PANTHER BNAC03G44070D PROTEIN 25 176 - -
Pumo4g00399 271 Pfam DnaJ domain 43 104 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00399 Pumo-Chr4 5337721 5339191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00399 43 104 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.394 1.02e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00399 - - gmx:100801809 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00399 4 5337721 5339191 Pumo4g00399 4 5337721 5339191 ECH
Pumo4g00399 4 5337721 5339191 Pumo2g01343 2 19584063 19585527 PCT